Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27060 820 / 0 CN, SPR2, TOR1 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) AT1G50890 687 / 0 ARM repeat superfamily protein (.1) AT2G07170 200 / 2e-53 ARM repeat superfamily protein (.1) AT1G27210 153 / 2e-38 ARM repeat superfamily protein (.1) AT1G59850 138 / 2e-34 ARM repeat superfamily protein (.1) AT5G62580 114 / 5e-26 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043053 [exp] 1548 / 0 AT4G27060 891 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10040047 [exp] 998 / 0 AT4G27060 801 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10019618 [exp] 660 / 0 AT4G27060 507 / 8e-171 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10019616 [exp] 320 / 2e-102 AT4G27060 254 / 2e-78 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10027590 [exp] 202 / 3e-54 AT2G07170 702 / 0.0 ARM repeat superfamily protein (.1) Lus10008545 [exp] 137 / 6e-33 AT2G07170 550 / 0.0 ARM repeat superfamily protein (.1) Lus10010730 [exp] 132 / 7e-32 AT1G27210 459 / 8e-155 ARM repeat superfamily protein (.1) Lus10019617 [exp] 118 / 3e-30 AT1G50890 99 / 2e-24 ARM repeat superfamily protein (.1) Lus10033129 [exp] 100 / 3e-21 AT5G62580 507 / 8e-174 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G136700 [exp] 1084 / 0 AT4G27060 855 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.001G421200 [exp] 1082 / 0 AT4G27060 884 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.006G079500 [exp] 198 / 1e-52 AT2G07170 793 / 0.0 ARM repeat superfamily protein (.1) Potri.008G192100 [exp] 159 / 2e-40 AT1G27210 474 / 3e-160 ARM repeat superfamily protein (.1) Potri.010G038900 [exp] 157 / 6e-40 AT1G27210 480 / 9e-163 ARM repeat superfamily protein (.1) Potri.015G069200 [exp] 102 / 2e-22 AT5G62580 366 / 9e-119 ARM repeat superfamily protein (.1) Potri.012G074400 [exp] 87 / 2e-17 AT5G62580 332 / 9e-106 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011149 pacid=23167498 polypeptide=Lus10011149 locus=Lus10011149.g ID=Lus10011149.BGIv1.0 annot-version=v1.0 ATGAGCTCGCAGGCGGCCAAATCCGCACCCAGAAATGCTAAACCCACGTCTCAAACCCAACAACCAACCTCCAGATCTTCCTCCCTGGCCGCCCACTTGG CAATGGTGGAGCTCAAGCAGCGAATCCTCACTTCTCTCTCCAAGCTCGCCGACCGGGACACCCATCAGATCGCTCTCGAAGATCTCCAATCCATCACAAC CTCCCTTTCCCCGGAAACCCTACCAATGCTCCTCAATTCCCTTTACGACACTCTCTCCGATCAGTCCACCGCCAAACCCTCCGTCAAGAAGGAGTCCCTA AACTTGCTCGGACTCGTCTGCCAAACACATCGCGAATTGACGCTCCCGCATCTCACCAAAGTCATTACTCACATTGTTAAGCGTCTCAAAGACTCTGATT CCGGTGTCAGAGATGCTTGCCGCGATGCCACTGGCGTTTTGTCCGGTTTGTACCTCGGAGAAGGCGGCGGCGGGGATGGAAATTCCGCCGGTGGGTCGTC TATGGTGGGGTTGTTCGTCAGACCTCTGTTTGAGGCCATGGGGGAACAGAACAAAGTTGTGCAGGTTGGGGCTTCCACATGTATGGCCAGAATGATTGAA TGCGCAGCTGCGGTGGATAAGGATGATGGTGGATCTGGCGGTGCTCCAGTAGCTGCTTTTCAGAAGCTTTGTCCCAGGATTTGTAAGTTGCTTAATGGCC AGAATTTCGTGGCGAAAGCTGCTTTGCTAGGCGTTGTGGCGAGTTTGTCCCAGGTTGGGGCAGTTGCCCCACAAAGTTTGCCTTCGTTGCTGCAGAGCAT TCATGACTGCCTTATCAGTACAGATTGGGCAACAAGAAAGGCTGGAGCTGAGGCTTTAAGTGCCATAGCAGCCCATTCATGCAGCCTAGTTTCAGAAGAA GCTGCTGATTCCATATTAACAGCGCTTGAGGCTTGCCGTTTTGATAAGATAAAACCTGTCAGAGATAGCATGAATGAGGCATTACAGTTATGGAAGAAGA TCGCAGGGAAAGGAGGAGATGGAGTTTCAGATGACCAGAAAGCTTCCTCTCCAGGGGGCGAAGATCGAGAAAACGCAGAACTACTAGACAAGAACTTGAA CACTAGGAATAGAGTAGAGTCTTCAACGAAAGGTTCACCAAATGGCTCCTCCCCAACTACTGATTCAGCTGCTGAGGCCAAAGCTGGGAGCATACCGGAC AAGGCAGTTGTAATATTGAAGAAGAAAGCACCAGCTCTGACAGACAAAGAGGTGAACCCGGAATTTTTTCACAAACTTGAAACAAGGGCTTCCGGCGATG TTGAGGTTGTTGTTTCTCGTCGATGTGTTAATACTTCGAGTCTTAACAATGAGGAAGAATCAGAATCAAAGAACATGGAGTCGAAAGCAAGGTCGGACCA CATTGCAAACAGCAAATCAGATGAGTTGTATTTCAATAACAAATACCGTATCAGTGATAGAGGAATCTCCGGGAGAGATTCTAGAAGTAGAGCATTTGCT GATGAATTCAACAGCAGGGAGACAACAACTGCAGATCGTGCCGGACTATCCAAAGCGGAAGGACAATCGGAAGGATCCTTAGCAAATAGTAGAGGAAATT GGTTGGCAATTCAGAGACAGTTGCTGCAACTAGAAAGACAGCAGACTCATCTAATGCATATGCTTCAGGATTTCATGGGCGGATCTCATGATAGCATGGT GACCTTGGAAAACAGAGTTCGAGGTCTTGAGAGAGTCGTGGAAGACATGGCACGGGATCTGTCTTTCTCCGCTGCCAGGAGAGGTGGTGGGTTTCCTTTG GCCTTTGAAGGTACATCCTCAAATAGATCATTAGGAAAGTACAATGGCTTCTCGGATTATTCCAGTCCAAACTACAATGGTCGGGCTCCATTTGGGGATA GATTTGCACAATCCGATGTTATTGCAAGGGGGAGAAATCCTCACTGGAGGGGCGAGGCATCTGATATTCGTGATAATTTCCCCTCGTATGGTTCATCGAG AAATGGTCATCATGGTGGCTCCAGAAGAGGGTCACCTAAATCTGATCACGAAAACGATCAACAAGTTGGGAGCAGAAGAGGTTGGGATAAAGGCAGTGGA CCACCTTCTTCTAGGCTCGGTGAAGGGCCATCTGCTAGAAGTGTTTGGCAGGCATCCAAAGACGAAGCTACCTTGGAAGCCATCCGTGTTGCTGGGGAAG AAGACAGAGAAGTATCACGGACTGCCAGGGTGGCCATCCCAGAGTTGACCGCTGAAGCGATGAACGATAATGTTGAACAAGAGCGAGACCCGGTATGGAC TTCGTGGATGAATGCCATGGACGCCCTTAAAGTCGGAGACATCGATACAGCTTACGCTGAAGTCACTTCCACCGGAGATGATCAGTTGCTTGTGAAGATA ATGGACAGGACAGGCCCTGTAGTTGACCAACTTACAAGTGAGACAGCGTGTGAAGTATTGCATGCTATTGCTCAGTTCTTGCTGGATCACAACTTGTTTG ACATCTCGTTCTCATGGATTCATCAGTTGGTAGATGTTGTGGTGGAGAATGGACCTGATGTTATGGGGATTCCAATGGAACTGAAGAGGGAACTTTTGCT GAACCTACATGAAGCATCGACGACAATGGAAATGCCAGAGGACTGGGAAGGAGTGGATCCTGAACAACTTCTACTGCAGTTGGCATCGGCGTGGCGAATT GAACTTCAACAGTTTGACAAGTAA
AA sequence Show only first row Show all	>Lus10011149 pacid=23167498 polypeptide=Lus10011149 locus=Lus10011149.g ID=Lus10011149.BGIv1.0 annot-version=v1.0 MSSQAAKSAPRNAKPTSQTQQPTSRSSSLAAHLAMVELKQRILTSLSKLADRDTHQIALEDLQSITTSLSPETLPMLLNSLYDTLSDQSTAKPSVKKESL NLLGLVCQTHRELTLPHLTKVITHIVKRLKDSDSGVRDACRDATGVLSGLYLGEGGGGDGNSAGGSSMVGLFVRPLFEAMGEQNKVVQVGASTCMARMIE CAAAVDKDDGGSGGAPVAAFQKLCPRICKLLNGQNFVAKAALLGVVASLSQVGAVAPQSLPSLLQSIHDCLISTDWATRKAGAEALSAIAAHSCSLVSEE AADSILTALEACRFDKIKPVRDSMNEALQLWKKIAGKGGDGVSDDQKASSPGGEDRENAELLDKNLNTRNRVESSTKGSPNGSSPTTDSAAEAKAGSIPD KAVVILKKKAPALTDKEVNPEFFHKLETRASGDVEVVVSRRCVNTSSLNNEEESESKNMESKARSDHIANSKSDELYFNNKYRISDRGISGRDSRSRAFA DEFNSRETTTADRAGLSKAEGQSEGSLANSRGNWLAIQRQLLQLERQQTHLMHMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSFSAARRGGGFPL AFEGTSSNRSLGKYNGFSDYSSPNYNGRAPFGDRFAQSDVIARGRNPHWRGEASDIRDNFPSYGSSRNGHHGGSRRGSPKSDHENDQQVGSRRGWDKGSG PPSSRLGEGPSARSVWQASKDEATLEAIRVAGEEDREVSRTARVAIPELTAEAMNDNVEQERDPVWTSWMNAMDALKVGDIDTAYAEVTSTGDDQLLVKI MDRTGPVVDQLTSETACEVLHAIAQFLLDHNLFDISFSWIHQLVDVVVENGPDVMGIPMELKRELLLNLHEASTTMEMPEDWEGVDPEQLLLQLASAWRI ELQQFDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10011149 [exp]	0	1
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10014636 [exp]	1.7	0.8839
AT5G42560			Abscisic acid-responsive (TB2/...		Lus10034519 [exp]	2.0	0.8653
AT1G69420			DHHC-type zinc finger family p...		Lus10036798 [exp]	3.5	0.8749
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10038449 [exp]	6.5	0.8528
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10033792 [exp]	8.2	0.8774
AT1G69420			DHHC-type zinc finger family p...		Lus10037133 [exp]	12.0	0.8411
AT5G40710	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10014570 [exp]	12.2	0.8182
AT3G12110		ACT11	actin-11 (.1)		Lus10016558 [exp]	12.6	0.8643
AT4G32840		PFK6	phosphofructokinase 6 (.1)		Lus10005488 [exp]	13.5	0.7926
AT1G35780			unknown protein		Lus10009931 [exp]	13.7	0.8252

Compare expression of checked genes

Lus10011149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.