Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54850 65 / 2e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043054 [exp] 199 / 2e-66 AT5G54850 90 / 6e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G421000 [exp] 82 / 4e-20 AT5G54850 110 / 1e-30 unknown protein Potri.011G136600 [exp] 80 / 2e-19 AT5G54850 77 / 7e-18 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011150 pacid=23167553 polypeptide=Lus10011150 locus=Lus10011150.g ID=Lus10011150.BGIv1.0 annot-version=v1.0 ATGGTTCAGAAACTAGAAGGTATCAAGGGTGGTGGGGGTTCCATCAAGGTTGGCACTACTGGAACAATCAGTAACCTCATCACAAGGGAGCTGGAGTCTT CTTCTTCCGTAGCTTCAAATCCCCATCAAGATCTTAAACTTAGCACCGGTTCGGTATCGGTTCCTTGTAAATCAATGGATGGCAGCAGCAGCAGCAGCAT TGTTGGAAACAGCGAGAAAGTGCACAAGGCGAAACAACACCAGGGTAAAGGAAGCCATAGAGTTCCAATGCTTGCAAGTGATGGCATCACTATGGAAAGA ACTCCTAGTAGGGAGAAGAAGAGCAGGAAACTAATCAACATTGTGGAAGTTGTAGACGTGAAATGTGGGAACCCGAATAGTAGAGCATGGGCAACCCCTC TAACAAGCAAGCTCAAGAAGCTTGGTTTCTCGAAGCTATCTGAAGGTGTGGTCTAG
AA sequence Show only first row Show all	>Lus10011150 pacid=23167553 polypeptide=Lus10011150 locus=Lus10011150.g ID=Lus10011150.BGIv1.0 annot-version=v1.0 MVQKLEGIKGGGGSIKVGTTGTISNLITRELESSSSVASNPHQDLKLSTGSVSVPCKSMDGSSSSSIVGNSEKVHKAKQHQGKGSHRVPMLASDGITMER TPSREKKSRKLINIVEVVDVKCGNPNSRAWATPLTSKLKKLGFSKLSEGVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54850			unknown protein		Lus10011150 [exp]	0	1
AT3G02860	C2H2ZnF		zinc ion binding (.1.2)		Lus10015686 [exp]	1.0	0.9477
AT1G43860			sequence-specific DNA binding ...		Lus10042780 [exp]	2.4	0.9314
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10024544 [exp]	3.5	0.9382
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10003183 [exp]	4.5	0.9325
AT1G22100			Inositol-pentakisphosphate 2-k...		Lus10010640 [exp]	5.2	0.9180
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10033000 [exp]	6.0	0.9261
AT4G05440		EDA35	embryo sac development arrest ...		Lus10027954 [exp]	6.0	0.9128
AT4G17020			transcription factor-related (...		Lus10012849 [exp]	7.3	0.9293
AT3G14075			Mono-/di-acylglycerol lipase, ...		Lus10015680 [exp]	7.5	0.9298
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10030810 [exp]	7.5	0.9382

Compare expression of checked genes

Lus10011150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.