Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48160 174 / 5e-57 signal recognition particle 19 kDa protein, putative / SRP19, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043056 [exp] 226 / 5e-77 AT1G48160 156 / 1e-49 signal recognition particle 19 kDa protein, putative / SRP19, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G036700 [exp] 191 / 9e-64 AT1G48160 189 / 7e-63 signal recognition particle 19 kDa protein, putative / SRP19, putative (.1) Potri.012G045500 [exp] 191 / 1e-63 AT1G48160 188 / 1e-62 signal recognition particle 19 kDa protein, putative / SRP19, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01922 [flax] [poplar] SRP19 SRP19 protein
Representative CDS sequence Show only first row Show all	>Lus10011152 pacid=23167500 polypeptide=Lus10011152 locus=Lus10011152.g ID=Lus10011152.BGIv1.0 annot-version=v1.0 ATGGATGCATCGGGCTCCGATAATATAAAGAGATGGATTGTGTTGTATCCGGTCTACATAAACGCCAAGAAAACCATAGCCGAAGGCAGAAGAATCAGTG CTCAGAAGGCTTGTGAGAATCCCACTTGTATTGAGATTTCGGATAGCTGCAAACACCTCAGTCTTCGCTCTGCAATTGAGCTTGATAAGGCGTATCCGCG AGATTTTATGCAAAGAGGGAGGGTCAGAGTTCTGCTCAAAAGAGAGGATGGAACTCCTTACAATCCTGCCATTCCTACCAGAAAAGAACTAATGCTCCGA GTTGCAGAGCTGGTGCCTCGACATTCAGGGAGGATTAGAAAGCAAGAACCTGCATCGACCTCAACTTCCGGAACATCAAAGTCGGAAAAGGGTAGAAAGA AGAAGAGGTAG
AA sequence Show only first row Show all	>Lus10011152 pacid=23167500 polypeptide=Lus10011152 locus=Lus10011152.g ID=Lus10011152.BGIv1.0 annot-version=v1.0 MDASGSDNIKRWIVLYPVYINAKKTIAEGRRISAQKACENPTCIEISDSCKHLSLRSAIELDKAYPRDFMQRGRVRVLLKREDGTPYNPAIPTRKELMLR VAELVPRHSGRIRKQEPASTSTSGTSKSEKGRKKKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48160			signal recognition particle 19...		Lus10011152 [exp]	0	1
AT4G29430		RPS15AE	ribosomal protein S15A E (.1)		Lus10040543 [exp]	1.0	0.9328
AT1G11890		ATSEC22, SEC22	SECRETION 22, Synaptobrevin fa...		Lus10036987 [exp]	2.0	0.9305
AT5G14290			Mitochondrial ribosomal protei...		Lus10041583 [exp]	3.0	0.9193
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10040122 [exp]	3.2	0.8928
AT1G12230			Aldolase superfamily protein (...		Lus10024606 [exp]	4.0	0.9017
AT2G28430			unknown protein		Lus10021477 [exp]	5.7	0.9182
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10024569 [exp]	8.5	0.9091
AT1G36310			S-adenosyl-L-methionine-depend...		Lus10040430 [exp]	13.0	0.9027
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10021515 [exp]	15.8	0.9092
AT3G05760	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10010928 [exp]	16.9	0.8721

Compare expression of checked genes

Lus10011152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.