Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50910 220 / 2e-66 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043058 [exp] 296 / 6e-100 AT1G50910 162 / 1e-47 unknown protein Lus10043057 [exp] 250 / 8e-83 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G136400 [exp] 333 / 1e-111 AT1G50910 269 / 1e-85 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011153 pacid=23167534 polypeptide=Lus10011153 locus=Lus10011153.g ID=Lus10011153.BGIv1.0 annot-version=v1.0 ATGGGCAGTGAGATTGAAAGTGGTCGGGAAGAGAAATTGAAGTCTTTGTTGGAGCAGCTTCAGTCAGAATGCGGGGTTTTTGAGAGAATCGTTTACAAGA ACAAAAACCAGCACAGAAGATGCTCTTACTTCCAGTACCTCCTGAAGGTCAGAAGGGATTTGAGGCTTTTGCAATCTGCTAAACTTGACGACCTGGTGGC TTCTTGTTTCCATGTTATCACTGGAAGGAAACCCAATCAAAAGATGTATCTGTTGGAAAGCTTGAAGTGGAGTAAAAATGCCTCTGGAGCACCCAATTTT ATGGAGAGACTTCTGGGAGCTGCACGTTTACTGTCACAGATGGTCGAGCCAATTTTGAAGGCTGCTGTGTATCCATTTTCGCTAGATAATTTGCTAACTG AGCAGGTATCTGTTTTGCTTGCTCAGTCTTTCTTCATGGAATTTTCCTTGGCAGTTTTGGCACTGCTTGCTCGCCTTCGAGTATTGGTTCAGCAGATACT GCTCGATGTTGCTTCCTTGTCCAACACAGTATCTTCAATCTCCATGAATAAGCAGTCTGTGAAAGTAAATATGAAGGGAGCAGAGGTATTTCGGGAGTAT TATCCTACCAACAAAGAATTTATCAGCCTAGAGTGTGAGTGGAAAGTTGATAAATTCGTCTTACTAGAAAGAGTACAGAAAATTAATGTAAAAGAAGATG AAGAGAGTATAAAAACCCCCAATGATGGAAGAAAGCCTATACGGTACCGATGTATTCAGGCATTTCTAAGAGCAATCGGTGATGATGACGAAGTTGAAAC AATGGATGAAGATCAACCCAGCAAAGAATCCTCCTCTCTGATGGAGAAAGGAGAGGACTTGTCAACTGTACCGTCAATCTCCAGCGAGAATGACCAGGAG AAGGGGCCTGATTGTATCCAAATGAGAGATGCAGCAGATGTTCTGGAAGTAGGAGAAAGTCCAGGAAAGGGTGGCCATGCGAATTCTACCTTGAGGTCTT CCTCAGATGGAAAACCATTGACACCAAACCTCGACGCAAAGCAAGTGGCGTTTGTTTCGCTGAAGAGATCTGCACCTACAACAAGTGCTGCATTCATCTC TGTTAAAAGGCCAGCAACGACTACTTCCAATGCAGCAACATTAGGGAATTCAAGGGAGAATGAGAAGGAACCAGAAGGAAAGGAGGATTCTTTTTTCAAT CTGCTAACATCTGGAGGAAATGTGAAAAATAGTCTATTCTGA
AA sequence Show only first row Show all	>Lus10011153 pacid=23167534 polypeptide=Lus10011153 locus=Lus10011153.g ID=Lus10011153.BGIv1.0 annot-version=v1.0 MGSEIESGREEKLKSLLEQLQSECGVFERIVYKNKNQHRRCSYFQYLLKVRRDLRLLQSAKLDDLVASCFHVITGRKPNQKMYLLESLKWSKNASGAPNF MERLLGAARLLSQMVEPILKAAVYPFSLDNLLTEQVSVLLAQSFFMEFSLAVLALLARLRVLVQQILLDVASLSNTVSSISMNKQSVKVNMKGAEVFREY YPTNKEFISLECEWKVDKFVLLERVQKINVKEDEESIKTPNDGRKPIRYRCIQAFLRAIGDDDEVETMDEDQPSKESSSLMEKGEDLSTVPSISSENDQE KGPDCIQMRDAADVLEVGESPGKGGHANSTLRSSSDGKPLTPNLDAKQVAFVSLKRSAPTTSAAFISVKRPATTTSNAATLGNSRENEKEPEGKEDSFFN LLTSGGNVKNSLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50910			unknown protein		Lus10011153 [exp]	0	1
AT1G72090			Methylthiotransferase (.1)		Lus10016926 [exp]	3.7	0.8168
AT4G37280			MRG family protein (.1)		Lus10011511 [exp]	5.8	0.8160
					Lus10019128 [exp]	5.9	0.7979
AT5G16950			unknown protein		Lus10026852 [exp]	7.7	0.7778
AT3G01800			Ribosome recycling factor (.1)		Lus10032060 [exp]	8.1	0.7803
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010745 [exp]	11.1	0.8157
					Lus10030985 [exp]	11.8	0.7592
AT2G45280		ATRAD51C	RAS associated with diabetes p...		Lus10000790 [exp]	13.3	0.7829
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10016992 [exp]	15.2	0.8136
AT3G23620			Ribosomal RNA processing Brix ...		Lus10027714 [exp]	15.7	0.8038

Compare expression of checked genes

Lus10011153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.