Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27070 761 / 0 TSB2 tryptophan synthase beta-subunit 2 (.1) AT5G54810 761 / 0 ATTSB1, TRP2, TRPB, TSB1 TRYPTOPHAN BIOSYNTHESIS B, TRYPTOPHAN BIOSYNTHESIS 2, tryptophan synthase beta-subunit 1 (.1) AT5G28237 553 / 0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) AT5G38530 127 / 2e-31 TSBtype2 tryptophan synthase beta type 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043059 [exp] 886 / 0 AT4G27070 766 / 0.0 tryptophan synthase beta-subunit 2 (.1) Lus10018358 [exp] 525 / 0 AT5G28237 555 / 0.0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) Lus10007651 [exp] 457 / 1e-158 AT5G28237 483 / 4e-169 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) Lus10000306 [exp] 122 / 6e-30 AT5G38530 779 / 0.0 tryptophan synthase beta type 2 (.1) Lus10008278 [exp] 97 / 9e-25 AT5G28237 104 / 3e-28 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G136000 [exp] 790 / 0 AT5G54810 755 / 0.0 TRYPTOPHAN BIOSYNTHESIS B, TRYPTOPHAN BIOSYNTHESIS 2, tryptophan synthase beta-subunit 1 (.1) Potri.001G420300 [exp] 786 / 0 AT4G27070 754 / 0.0 tryptophan synthase beta-subunit 2 (.1) Potri.011G024900 [exp] 543 / 0 AT5G28237 586 / 0.0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) Potri.017G109600 [exp] 121 / 1e-29 AT5G38530 828 / 0.0 tryptophan synthase beta type 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00291 [flax] [poplar] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10011154 pacid=23167549 polypeptide=Lus10011154 locus=Lus10011154.g ID=Lus10011154.BGIv1.0 annot-version=v1.0 ATGGCCTCCGCCTCCACCGTTCGCAGCAGCGCCGTCCTCTCCCCGCCGCCCTACATTTCTTCCTCTTCCTCTGCCACTACCTACTCTTCCAGTCAGTTGA ACCTCCGGCTCGGCAAATCCACGATTATACCATCTTCCTCCTCTCGCACCGCCACCACCACCGGGTTCTCTATTTGCTGTAGTCTCACCAGAGAGGCGGC GGCGGCGGCTATCATTATGCCCGTCAAGGACGATTCAGACCCTTCTCTCTGGAACCGGCCCGATTCCTTTGGCCGATTTGGCAAATTCGGCGGTAAGTAT GTCCCCGAAACCCTCATGTACGCTCTCTCCGAGCTCGAATCCGCCTTCCATTCCGTCAAAACCGACCCCGATTTCCAGGCAGAACTATCGGGCATTTTGA AAGACTACGTCGGAAGGGAAACACCGCTTTACTTCGCGGAGCGCCTCACCGATCATTACAAGCGTCCTAATGGTGAAGGCCCACACATTTACCTCAAGAG AGAAGATCTGAACCACACAGGCGCTCACAAGATCAACAACGCCATAGGCCAAGCTTTACTCGCCAAACGATTAGGCAAGAAGCGGATCATTGCTGAAACT GGAGCTGGACAGCATGGAGTCGCCCCTGCTACCGTCTGTGCCCGATTCGGCCTGGATTGCATCATCTACATGGGTGCACAGGACATGGAAAGACAATCCC TAAATGTATTTCGAATGCGCCTCCTTGGAGCTGAAGTTAGAGGAGTCCATTCCGGTACCGCCACGCTTAAAGATGCTACATCAGAAGCTATAAGGGATTG GGTGACGAATGTGGAGTCTACTCATTACATTCTGGGATCAGTCGCAGGGCCGCATCCTTATCCCATGATGGTTAGGGATTTCCACAAGGTTATCGGCGAG GAGACGAGGAGGCAAGCGTTGGAGAAATGGGGTGGGAAGCCGGATGTCCTTGTTGCATGCGTTGGTGGCGGTTCGAATGCGATGGGGTTGTTTGAGGATT TTGTGAAAGATACAGATGTTAGGTTGATCGGTGTGGAGGCTGCTGGGTTGGGGCTGGATAGCGGGAAGCATGCTGCAACTTTGACTAAAGGGGAAGTTGG TGTGTTGCATGGAGCTATGAGCTATTTGTTGCAGGATGATGATGGCCAGATCATCGAGCCTCATTCCATTAGTGCTGGGTTGGATTACCCCGGAGTTGGA CCGGAGCACAGTTTCCTGAAAGAGAAAGGCCGTGCTGAATATTATTGTGTTACGGACGAGGAGGCGTTAGAAGCATTCAAGAGAGTGTCGAGACTTGAAG GGATAATACCGGCACTGGAGACGTCTCATGCATTGGCGTACCTGGAGAAGCTGTGCCCAACGCTACCAGACGGGACGAAGGTGGTACTGAACTGCAGTGG CCGTGGGGACAAGGACGTTCAGACTGCCATCAAGCATTTGAAAGTCTGA
AA sequence Show only first row Show all	>Lus10011154 pacid=23167549 polypeptide=Lus10011154 locus=Lus10011154.g ID=Lus10011154.BGIv1.0 annot-version=v1.0 MASASTVRSSAVLSPPPYISSSSSATTYSSSQLNLRLGKSTIIPSSSSRTATTTGFSICCSLTREAAAAAIIMPVKDDSDPSLWNRPDSFGRFGKFGGKY VPETLMYALSELESAFHSVKTDPDFQAELSGILKDYVGRETPLYFAERLTDHYKRPNGEGPHIYLKREDLNHTGAHKINNAIGQALLAKRLGKKRIIAET GAGQHGVAPATVCARFGLDCIIYMGAQDMERQSLNVFRMRLLGAEVRGVHSGTATLKDATSEAIRDWVTNVESTHYILGSVAGPHPYPMMVRDFHKVIGE ETRRQALEKWGGKPDVLVACVGGGSNAMGLFEDFVKDTDVRLIGVEAAGLGLDSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVG PEHSFLKEKGRAEYYCVTDEEALEAFKRVSRLEGIIPALETSHALAYLEKLCPTLPDGTKVVLNCSGRGDKDVQTAIKHLKV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10011154 [exp]	0	1
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10043059 [exp]	1.0	0.9731
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10005064 [exp]	1.4	0.9497
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10018487 [exp]	3.7	0.9254
AT1G76810			eukaryotic translation initiat...		Lus10030500 [exp]	4.2	0.9461
AT1G14060			GCK domain-containing protein ...		Lus10026621 [exp]	4.7	0.9188
AT5G43390			Uncharacterised conserved prot...		Lus10021875 [exp]	4.7	0.9299
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10032624 [exp]	5.0	0.9414
AT4G03240		ATFH, FH	frataxin homolog (.1)		Lus10033750 [exp]	6.5	0.9190
AT1G76820			eukaryotic translation initiat...		Lus10012856 [exp]	6.9	0.9421
AT5G13890			Family of unknown function (DU...		Lus10012588 [exp]	7.9	0.9345

Compare expression of checked genes

Lus10011154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.