Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50940 395 / 2e-138 ETFALPHA electron transfer flavoprotein alpha (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043061 [exp] 311 / 7e-99 AT3G13050 522 / 1e-176 nicotinate transporter, Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G135600 [exp] 400 / 1e-140 AT1G50940 467 / 5e-166 electron transfer flavoprotein alpha (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01012 [flax] [poplar] ETF Electron transfer flavoprotein domain CL0085 [flax] [poplar] FAD_DHS PF00766 [flax] [poplar] ETF_alpha Electron transfer flavoprotein FAD-binding domain
Representative CDS sequence Show only first row Show all	>Lus10011156 pacid=23167512 polypeptide=Lus10011156 locus=Lus10011156.g ID=Lus10011156.BGIv1.0 annot-version=v1.0 ATGGCGATTGCTCGAGCTGTCACTATCAGAGCGTCTCTCCGGCCACGCTTCTCATCGATTGTCTCCATTTCTCGATCCGTACTTGTAGCCGATTCAGGTA ACTTTGCTCATCATCTAGCAGAACCATGGGCTAGGTTGATTCAATTAGTCCAGCTTAGGGACGATTATTCGCACATAATTGCTGCATCAAACTCATTCGG GAAAAATGTGCTCCCACGAGTAGCAGCCCTTTTGGATGTTTCTCCGATCACTGATGTTATTAGCATTTCTGGACCTAATCAGTTTACCAGACCAATTTAT GCGGGAAACGCCCTTTCTACTGTCCGCTACACTGGCAGAAGCCCTTGTTTATTGTCTGTTAGATCGACGTCCTTTCCTGAACCTACCCTCGCAGCAGATT TTACAGCTGAGGCAGCATCTATTTCCCAGGTTGATCTCTCAGCCCTTAATGAAGATTGTACAGCGAAGTCTAGATATGTGAAGCTTGCATCACAGGATAC AGAACGCCCTGACCTAGGAAATGCTAAAGTGGTTGTCACTGGAGGTAGAGCCTTAAAAAGTGCTGAAAACTTTCAGTTGATTGAGAAGCTTGCAGAAAAA CTTGGCGCAGCAGTTGGTGCGACTCGTGCTGCTGTAGATGCAGGATTCGTTCCAAATGACCTTCAGGTCGGTCAGACGGGGAAAATTGTTGCCCCGGAAC TGTACTTGGCGTTTGGCGTTTCGGGAGCAATTCAACATATAGCTGGCATGAGAGATTCAAAGGTGATAGTGGCAGTGAACAAAGACTCCGATGCACCGAT TTTCAAGGTGGCTGATTATGGGCTTGTTGGAGATCTGTTTGAAGTGATTCCGGAGTTGCTGGAGAAACTCCCAGAAAAGAAGTAG
AA sequence Show only first row Show all	>Lus10011156 pacid=23167512 polypeptide=Lus10011156 locus=Lus10011156.g ID=Lus10011156.BGIv1.0 annot-version=v1.0 MAIARAVTIRASLRPRFSSIVSISRSVLVADSGNFAHHLAEPWARLIQLVQLRDDYSHIIAASNSFGKNVLPRVAALLDVSPITDVISISGPNQFTRPIY AGNALSTVRYTGRSPCLLSVRSTSFPEPTLAADFTAEAASISQVDLSALNEDCTAKSRYVKLASQDTERPDLGNAKVVVTGGRALKSAENFQLIEKLAEK LGAAVGATRAAVDAGFVPNDLQVGQTGKIVAPELYLAFGVSGAIQHIAGMRDSKVIVAVNKDSDAPIFKVADYGLVGDLFEVIPELLEKLPEKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50940		ETFALPHA	electron transfer flavoprotein...		Lus10011156 [exp]	0	1
AT3G58170		ATBET11, ATBS14...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10033868 [exp]	2.4	0.9308
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10023203 [exp]	4.6	0.9124
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10019388 [exp]	5.7	0.9200
AT1G04555			unknown protein		Lus10014458 [exp]	5.8	0.9273
AT3G61113			Ubiquitin related modifier 1 (...		Lus10041378 [exp]	6.0	0.9155
AT1G07260		UGT71C3	UDP-glucosyl transferase 71C3 ...		Lus10027334 [exp]	6.5	0.8939
AT1G29040			unknown protein		Lus10013930 [exp]	11.4	0.8975
AT2G37480			unknown protein		Lus10024420 [exp]	12.5	0.8894
AT5G19140		AtAILP1, AILP1	Aluminium induced protein with...		Lus10010505 [exp]	13.4	0.8991
AT1G75380		ATBBD1	bifunctional nuclease in basal...		Lus10024277 [exp]	16.0	0.8881

Compare expression of checked genes

Lus10011156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.