Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27080 717 / 0 ATPDI7, ATPDIL5-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) AT3G20560 709 / 0 ATPDI12, ATPDIL5-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) AT1G50950 669 / 0 Thioredoxin protein with domain of unknown function (DUF1692) (.1) AT1G36050 78 / 2e-15 Endoplasmic reticulum vesicle transporter protein (.1.2) AT1G21750 79 / 3e-15 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT3G22290 75 / 2e-14 Endoplasmic reticulum vesicle transporter protein (.1) AT1G77510 73 / 2e-13 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT5G60640 71 / 1e-12 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT1G22200 70 / 1e-12 Endoplasmic reticulum vesicle transporter protein (.1.2) AT3G54960 67 / 1e-11 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043062 [exp] 900 / 0 AT4G27080 698 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10040029 [exp] 813 / 0 AT4G27080 702 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10019611 [exp] 782 / 0 AT4G27080 664 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10021024 [exp] 80 / 6e-16 AT3G22290 435 / 6e-153 Endoplasmic reticulum vesicle transporter protein (.1) Lus10018156 [exp] 76 / 2e-14 AT1G21750 710 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10036449 [exp] 76 / 3e-14 AT1G36050 645 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10029681 [exp] 74 / 8e-14 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10042721 [exp] 74 / 2e-13 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10036158 [exp] 71 / 6e-13 AT1G36050 596 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G419300 [exp] 790 / 0 AT3G20560 761 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) Potri.011G135500 [exp] 780 / 0 AT4G27080 760 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Potri.008G040100 [exp] 79 / 1e-15 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.006G023900 [exp] 79 / 1e-15 AT3G22290 572 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.005G179000 [exp] 76 / 3e-14 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.005G168800 [exp] 75 / 3e-14 AT1G36050 724 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.013G111400 [exp] 75 / 3e-14 AT1G35620 533 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.002G094400 [exp] 74 / 4e-14 AT1G36050 692 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.016G022800 [exp] 73 / 7e-14 AT3G22290 574 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.002G082100 [exp] 74 / 8e-14 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07970 [flax] [poplar] COPIIcoated_ERV Endoplasmic reticulum vesicle transporter CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10011157 pacid=23167556 polypeptide=Lus10011157 locus=Lus10011157.g ID=Lus10011157.BGIv1.0 annot-version=v1.0 ATGACAGGCCTCTCGACGAGCAGGCTCAAATCTGTCGATTTCTACAGGAAAATACCCAGGGACTTGACTGAAGCATCACTGTCGGGTGCTGGATTATCCA TTATAGCTGCACTAGCCATGCTGTTTTTGTTTGGAATGGAACTGAGTAATTATTTAACAATACGCCCATCTACATCTGTGATCGTTGACAGGAGCACTGA TGGGGACTATTTGCGCATTGACTTTAATATTAGTTTTCCAGCCCTGTCTTGCGAGTTTGCAGCAGTTGACCTGAGCGATGTGTTAGGAACTAACAGGTTA AATATTACAAAAACAGTGAGAAAATTCTCTATAGACCACAATCTAAAGCCCACAGGCTCAGAATTTCACTCAGGCCCTATTATGCATCTCATCAAGCACG ATGAACATGTTGGTGACAGTGAGGCTGAAGGTTCTGTGATACTCAATGCTCAAAATTTTGATGTTTTCTCAAATCATACTACAACGCTGTGCATTTGTTT ACTTTCTTCCTCTGATGTAGTTGAATATTTCCCTCTCAGGTTTCCAATATTGGTCGTCAATTTCTATGCTCCTTGGTGTACCTGGAGCAATCGCCTGAAA CCTTCTTGGGAAAAGGCAGCTAAAATTTTGTCAGAGAGGTATGATCCTGATATTGATGGACGCATCATTTTGGCAAAGGTGGATTGCACTCAAGAAGGTG ATTTGTGTAGGAGGCATCACATCCAAGGATATCCTTCCATTAGAATTTTCCGTAAGGGAAGCGATTTGAGGGAAGACCATGGACACCATGAGCATGAGTC CTACTATGGGGATCGTGATACTGAGACCTTGGTGAAGACTATGGAAGATCTTGTCGCACCAATTCCAGCCCTGCATAAAAAAACCGACAATTCTACCGAG AATATCAAACGACCTGCACCCTCTACTGGAGGATGTAGAATAGAGGGATATGTTCGTGTTAAGAAGGTTCCTGGGAACCTTATCATTTCAGCTCGTTCAG GATCCCACTCCTTTGATCCTTCTCAAATGAACATGTCACATGTTATTTCGCATCTCTCGTTTGGTATGAAATTCTCACCCAGGGCGTTGGATGACGCGAA GAGATTGATGCCATATATTGGTCGAAGTCATGATAGGCTTAATGGGCGGACATTTATTAACCAGCGGGATATAGGAGCTAATGTTACAATCGAGCACTAT CTTCAAATAGTTAAAACAGAGGTGGTATCGATACGAGGGTCTCGTGAGCATAAGATAATAGAAGAGTACGAGTATACAGCACACAGCAGCTTGGCTCAGA GTGTGGATATTCCTGTTGCGAAATTCCATTTCGAGCTCTCTCCGATGCAGGTTCTAATCACAGATGATCCCAAGTCATTTTCGCATTTCATAACCAATGT TTGCGCCATCATCGGTGGAATATTCACGGTAGGTGATGCCATTTTATCTCATCGTAGTTCCGATAAGAGATGTTCGCAGGTATCGCAGCTTTGGTCTAAA AATCACCATGTTGGGTTTCAGGTGGCGGGAATACTGGACTCCATTTTGCACAACACAATCCGGCTAGTGAAAAAGGTGGAGCTAGGCAAGAACTTTTGA
AA sequence Show only first row Show all	>Lus10011157 pacid=23167556 polypeptide=Lus10011157 locus=Lus10011157.g ID=Lus10011157.BGIv1.0 annot-version=v1.0 MTGLSTSRLKSVDFYRKIPRDLTEASLSGAGLSIIAALAMLFLFGMELSNYLTIRPSTSVIVDRSTDGDYLRIDFNISFPALSCEFAAVDLSDVLGTNRL NITKTVRKFSIDHNLKPTGSEFHSGPIMHLIKHDEHVGDSEAEGSVILNAQNFDVFSNHTTTLCICLLSSSDVVEYFPLRFPILVVNFYAPWCTWSNRLK PSWEKAAKILSERYDPDIDGRIILAKVDCTQEGDLCRRHHIQGYPSIRIFRKGSDLREDHGHHEHESYYGDRDTETLVKTMEDLVAPIPALHKKTDNSTE NIKRPAPSTGGCRIEGYVRVKKVPGNLIISARSGSHSFDPSQMNMSHVISHLSFGMKFSPRALDDAKRLMPYIGRSHDRLNGRTFINQRDIGANVTIEHY LQIVKTEVVSIRGSREHKIIEEYEYTAHSSLAQSVDIPVAKFHFELSPMQVLITDDPKSFSHFITNVCAIIGGIFTVGDAILSHRSSDKRCSQVSQLWSK NHHVGFQVAGILDSILHNTIRLVKKVELGKNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10011157 [exp]	0	1
AT5G28850			Calcium-binding EF-hand family...		Lus10032772 [exp]	3.0	0.9021
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10017851 [exp]	3.5	0.8630
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Lus10040815 [exp]	4.0	0.8481
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10042570 [exp]	4.5	0.8258
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030899 [exp]	7.9	0.8744
AT4G17910			transferases, transferring acy...		Lus10001270 [exp]	9.5	0.8030
AT3G17430			Nucleotide-sugar transporter f...		Lus10017115 [exp]	11.3	0.8352
AT4G28550			Ypt/Rab-GAP domain of gyp1p su...		Lus10022905 [exp]	11.7	0.8219
AT5G50390		EMB3141	EMBRYO DEFECTIVE 3141, Pentatr...		Lus10013389 [exp]	15.6	0.8412
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10010957 [exp]	17.8	0.8630

Compare expression of checked genes

Lus10011157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.