Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54780 623 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G27100 613 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G20440 489 / 9e-172 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT4G28550 482 / 6e-169 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT3G59570 197 / 1e-55 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G43490 192 / 3e-54 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) AT5G52580 132 / 5e-33 RabGAP/TBC domain-containing protein (.1.2) AT5G41940 127 / 8e-32 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G53570 120 / 2e-29 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G49350 120 / 3e-29 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043064 [exp] 865 / 0 AT2G20440 630 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10022905 [exp] 476 / 3e-166 AT4G28550 621 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10024920 [exp] 338 / 2e-112 AT4G28550 618 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10004802 [exp] 193 / 3e-55 AT2G43490 499 / 2e-170 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Lus10023237 [exp] 129 / 2e-32 AT5G41940 571 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008872 [exp] 129 / 2e-32 AT5G41940 582 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10027697 [exp] 125 / 2e-32 AT5G52580 526 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10039968 [exp] 130 / 4e-32 AT5G52580 867 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10038091 [exp] 128 / 1e-31 AT5G52580 938 / 0.0 RabGAP/TBC domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G419100 [exp] 688 / 0 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.011G135300 [exp] 678 / 0 AT4G27100 667 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.005G227400 [exp] 492 / 5e-173 AT4G28550 616 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.007G132900 [exp] 200 / 6e-57 AT2G43490 808 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.017G023200 [exp] 199 / 2e-56 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.018G127500 [exp] 135 / 3e-34 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.006G066300 [exp] 131 / 1e-32 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.015G007400 [exp] 125 / 7e-31 AT5G41940 596 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.012G024500 [exp] 123 / 3e-30 AT3G49350 601 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G084300 [exp] 119 / 1e-28 AT5G41940 603 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10011159 pacid=23167544 polypeptide=Lus10011159 locus=Lus10011159.g ID=Lus10011159.BGIv1.0 annot-version=v1.0 ATGTGGAGCGCCGCAGAGCCCGCGGATTCTTACTACGAGGTCCGCCCAGAGTGTACGGATGTTCCTAAAACCCGCTTCAAAATCAAGCCTGGTAAGACAT TGAGTGTGAGGAAATGGCAGACTTCATTTACCCCAGAAGGCGAACTAGATATAAGTAAGACCTTAGGTCGAATCCAACGTGGGGGGATCCATCCGACAAT TAGAGGAGAAGTTTGGGAATTTCTGCTTGGTTGTTATGATCCCAGGAGTACATTTGAGGAACGAGACGAAATTCGTCAGCGTAGAAGGGTTGAGTATGCT AAGTGGAAGGAGGAATGCCGGGAAACATTTCCGATTGTCGGAAGTGGCAAATTTATTACAGCCCCTTGCATCACAGAAGATGCTGAACCTCCCAAGGTTA ATGACGCTGCTGATTCTGATGAAGATGGGGAAGATGGTAAAGAAGACGGTAAAGAAGATGGTAAAGAAGATGGGGAAGCTCCTGCTCAAGCTGTAATCGG TGAAACTGTTGCAAATGGTGAAACTCAATCCAGTATAAATATTTCAAGTTGCGAAATGTTGAAAGAGATTATTAGTACTCGTGGGGGTCTGGACAAGAAA GTCATCCAGTGGATGCTCACCTTGCATCAAATAGGTTTGGATGTCATCCGTACAGACCGAACATTGGTGTTTTATGAGAAGCAAGAGAATTTGTCAAAAC TATGGGATATCCTAGCTGTCTATGCTTGGATTGACACAGATGTCGGATACTGTCAAGGAATGAGTGATCTTTGCTCCCCGATGATAATTCTTCTTGATGA TGAAGCTGATGCGTTTTGGTGCTTTGAACGTCTGATGAGGAGATTGCGAGGAAACTTCAGATGTACAGAGAGCTCTGTTGGTGTGGAGTCGCAACTCACT AATTTGGCAGCAATTACTCAAGTTATTGATCCAAAACTTCACCAGCATTTAGATGCTCTAGGTGGAGGTGACTATTTATTTGCTTTCCGGATGCTTATGG TTCTATTTCGGAGAGAATTCTCTTTCTGCGACTCGCTTTACCTTTGGGAGATGATGTGGGCACTTGAATATGACCCTGACTTGTTTGAGTTATATGAAGA GCCTGAGGCAGCAGAAGGATCAAAAGGAAGAACCAAGTCCATTCGCCACTATGGAAAGTACGAGAGGGAGAACATGAAAGCCGGTTCAGGAGCTGAAGCG CCCCTTCCCATCTCGGTATTCCTTGTTGCCAGTGTCTTGAAAGACAAAAGTGCAACTCTACTTCAAGAAGCCCGAGGTTTGGATGATGTTGTCAAGATAT TGAATGACATTACCGGGAATATAGATGCCAAGAAGGCCTGCACTGGTGCAATGAAACTTCACAAGAAGTATTTGAAGAAGGCCAAGAAGTAG
AA sequence Show only first row Show all	>Lus10011159 pacid=23167544 polypeptide=Lus10011159 locus=Lus10011159.g ID=Lus10011159.BGIv1.0 annot-version=v1.0 MWSAAEPADSYYEVRPECTDVPKTRFKIKPGKTLSVRKWQTSFTPEGELDISKTLGRIQRGGIHPTIRGEVWEFLLGCYDPRSTFEERDEIRQRRRVEYA KWKEECRETFPIVGSGKFITAPCITEDAEPPKVNDAADSDEDGEDGKEDGKEDGKEDGEAPAQAVIGETVANGETQSSINISSCEMLKEIISTRGGLDKK VIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWIDTDVGYCQGMSDLCSPMIILLDDEADAFWCFERLMRRLRGNFRCTESSVGVESQLT NLAAITQVIDPKLHQHLDALGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDLFELYEEPEAAEGSKGRTKSIRHYGKYERENMKAGSGAEA PLPISVFLVASVLKDKSATLLQEARGLDDVVKILNDITGNIDAKKACTGAMKLHKKYLKKAKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27100			Ypt/Rab-GAP domain of gyp1p su...		Lus10011159 [exp]	0	1
AT3G14300		ATPMEPCRC, ATPM...	A. THALIANA PECTIN METHYLESTER...		Lus10003934 [exp]	4.8	0.8485
AT1G61850			phospholipases;galactolipases ...		Lus10007661 [exp]	11.1	0.8188
AT5G09400		KUP7	K+ uptake permease 7, K+ uptak...		Lus10036160 [exp]	11.6	0.7648
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10028087 [exp]	15.3	0.7909
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10016124 [exp]	17.2	0.8132
AT5G09890			Protein kinase family protein ...		Lus10042650 [exp]	18.3	0.7845
AT3G16480		MPPALPHA	mitochondrial processing pepti...		Lus10012926 [exp]	18.4	0.8359
AT1G01220		AtFKGP	Arabidopsis thaliana L-fucokin...		Lus10030230 [exp]	18.7	0.8004
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001368 [exp]	19.1	0.8286
AT2G16405			Transducin/WD40 repeat-like su...		Lus10028800 [exp]	22.8	0.7878

Compare expression of checked genes

Lus10011159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.