Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20580 772 / 0 COBL10 COBRA-like protein 10 precursor (.1) AT4G27110 744 / 0 COBL11 COBRA-like protein 11 precursor (.1) AT4G16120 669 / 0 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT3G16860 626 / 0 COBL8 COBRA-like protein 8 precursor (.1) AT5G49270 626 / 0 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT5G60920 142 / 5e-36 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT5G15630 135 / 3e-34 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G29810 134 / 2e-33 COBL2 COBRA-like protein 2 precursor (.1) AT3G02210 126 / 7e-31 COBL1 COBRA-like protein 1 precursor (.1) AT1G09790 116 / 2e-27 COBL6 COBRA-like protein 6 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043065 [exp] 1244 / 0 AT3G20580 791 / 0.0 COBRA-like protein 10 precursor (.1) Lus10016847 [exp] 683 / 0 AT4G16120 860 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10037720 [exp] 673 / 0 AT4G16120 850 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10025045 [exp] 599 / 0 AT4G16120 675 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10010022 [exp] 547 / 0 AT4G16120 581 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10012598 [exp] 143 / 2e-36 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1) Lus10031972 [exp] 140 / 9e-36 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034379 [exp] 140 / 1e-35 AT3G02210 685 / 0.0 COBRA-like protein 1 precursor (.1) Lus10035131 [exp] 140 / 1e-35 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G135200 [exp] 867 / 0 AT3G20580 807 / 0.0 COBRA-like protein 10 precursor (.1) Potri.001G419000 [exp] 858 / 0 AT3G20580 804 / 0.0 COBRA-like protein 10 precursor (.1) Potri.010G001100 [exp] 689 / 0 AT4G16120 854 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Potri.014G125300 [exp] 613 / 0 AT4G16120 766 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Potri.004G167100 [exp] 141 / 5e-36 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1) Potri.004G117200 [exp] 135 / 4e-34 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098700 [exp] 134 / 6e-34 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060100 [exp] 134 / 2e-33 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060000 [exp] 133 / 4e-33 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G219200 [exp] 129 / 9e-32 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [flax] [poplar] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Lus10011160 pacid=23167541 polypeptide=Lus10011160 locus=Lus10011160.g ID=Lus10011160.BGIv1.0 annot-version=v1.0 ATGGAGGAGGGTCCCTCAAAATCCATTCTCAAATTTGTCTTCATCATCACCACCATCACGACCGCACTCCTCCTACACGCCTCCCACGCCCAATTATTCG ACGCCGACGCCGGAGGCGGAGGCGGAGGCGGAGACGGAGGCGGAGGCGGAGACGGAGGCGGAGACGGAGGAGGAGATGACGCAGGAGGCGGAGGAGGAGG AGGAGGAGACGACGGGGATCAGAAAATAGCTCCACCGCCAGGATTGGCGCGTTGTAACGGGATATTCCTGACGTACGCGTTCACGTCACGCGAGAGGGAG TTTCCCCACGTGAAGAACGTGACGGCACAGGCGTGGGCGTTCAAGGCCACGGCGGCGATCTTCAACACGGGGGAAGAGGAGCTGAAGGCGTGGCAGATGT TCATCGGGTTCCACAACCGCGAGATCTTGGTGTCGGCCGACGGGGGAGCGCTTCTGGAAGGGGACGAGCTCCCCGCGTCGGGAGGGAAAGGGGCCACGTT CGTGGGGACGGCAATGCCCGATCTGAAAAGCTCAATAGAGACGGCAGGGGATATGACGCAGATCTCGGCCCAGATTGATATCTCCGGGACGCAGTTTGGG CTGAATGCCAAGGCTATTCCCATGCCTAAGAGCATCAAGCTTGTTAATGATGGCTATGCATGCCCTGCTGCCAAAAGAAAAGGGAAAAACTACATGGAAG TGTGCTGTAGGGTGGATCCAAAGGCGAAGGCGAAGAAGAAGACCAAGGAAAAAAAGACCAAGTTCTTCCCGCGTCGCAACGGGGACCTAGAGATCACTTA CGACATCATGCAAGCATGGGGTAACAACTACGACGCACAGATAACCATGGACAACAATAACCCTCTCGGCCGCCTCGACAACTGGAATCTCACCTGGCAA TGGATGCACAACGAGTTCATCTTCTCCATGCGCGGCGCCTACTCTCGATCTCGCAACCTCGCCCAGTGCATCTACGGCCCTGTCGGGAAATACTACCAAG AGATGGACTTCTCCACCGTCAGCAGCTGCGACCGTAACCCTGTGATCTCGGACCTCCCTCCTGACCGGAAAGACGACCCTAAGATCGCTAAGCTCCCGTT CTGCTGCAAGAATGGGACCCTCCTCCCCGCCATCATGGACGAGGAGCGAGCTCGTGCCATCTTTCAGATGCAGGTGTTCAAACTCCCTCCTAACTTGAAC CGCACCGCCTTCGACCCTCCACAGAAGTGGAAGATCCAAGGGGTGTTGAACTCCCAATACAAGTGCGGTCCACCCGTCAGGATTGACCCCACCGTCTTCC CCGACCCCACCGGTCTGGCCGCGACTTATAATGCTATCGCCACGTGGCAGATCGTGTGTAACATTGCTCGTCCCAAGGAGCGACAGACGAGGTGTTGCGT CTCCTTCTCGGCCTACTACAATGATTCGGCTATTCCTTGCAACACATGTGCATGCGGGTGCGATCAGAATTCTGGATGCAGTGAGAAAGGCAATCCGATG CTGCTCCCACCTGACGCCCTCTTGGTCCCATTTGAGAACAGAACCAAGAAGGCGATTGCATGGGCTAAGTTGAAGCATCGTAAGGTGCCTAAACCAAGGC CATGCCCCGACAATTGTCCTGTCAGCATTAACTGGCACGTCAACTCGGATTTCGCGAGCGGATGGACCGCTCGGATCACTCTGTTCAACTGGGACCAAAC TCCGTTCGAGGATTGGTTCGTGGCTATACAAATGGGAAGGGCGTATCCAGGATACGAAAATGTGTACTCGTTTAACGGAACTAAGCTGCCCAAGCAAAAC AAGACCATCTTCCTACAAGGGTTGCCGGGGTTGAACTACTTGGTGGCCGAAACCAACGGTACCAGACCAGGGGATCCCAGGATTCCAGGGAAGCAGCAGT CGGTGATTTCATTCACCAAAAAGCAGACCCCTAGAATCAACATACCTCGCGGGGATGGGTTCCCCAAGAGGGTGATCTTCAACGGGGAAGAATGCGCGCT GCCCAAACACATACCGACGCAAAGTGGGGGTCACAAGTCGGTCCGGGTCGATATGCTCAAGGTTATGGTTGGTGCTGCCGTGGTGGCGTATGGAATCATG GGAGACTATGGACGTCTATTGCATCGATGA
AA sequence Show only first row Show all	>Lus10011160 pacid=23167541 polypeptide=Lus10011160 locus=Lus10011160.g ID=Lus10011160.BGIv1.0 annot-version=v1.0 MEEGPSKSILKFVFIITTITTALLLHASHAQLFDADAGGGGGGGDGGGGGDGGGDGGGDDAGGGGGGGGDDGDQKIAPPPGLARCNGIFLTYAFTSRERE FPHVKNVTAQAWAFKATAAIFNTGEEELKAWQMFIGFHNREILVSADGGALLEGDELPASGGKGATFVGTAMPDLKSSIETAGDMTQISAQIDISGTQFG LNAKAIPMPKSIKLVNDGYACPAAKRKGKNYMEVCCRVDPKAKAKKKTKEKKTKFFPRRNGDLEITYDIMQAWGNNYDAQITMDNNNPLGRLDNWNLTWQ WMHNEFIFSMRGAYSRSRNLAQCIYGPVGKYYQEMDFSTVSSCDRNPVISDLPPDRKDDPKIAKLPFCCKNGTLLPAIMDEERARAIFQMQVFKLPPNLN RTAFDPPQKWKIQGVLNSQYKCGPPVRIDPTVFPDPTGLAATYNAIATWQIVCNIARPKERQTRCCVSFSAYYNDSAIPCNTCACGCDQNSGCSEKGNPM LLPPDALLVPFENRTKKAIAWAKLKHRKVPKPRPCPDNCPVSINWHVNSDFASGWTARITLFNWDQTPFEDWFVAIQMGRAYPGYENVYSFNGTKLPKQN KTIFLQGLPGLNYLVAETNGTRPGDPRIPGKQQSVISFTKKQTPRINIPRGDGFPKRVIFNGEECALPKHIPTQSGGHKSVRVDMLKVMVGAAVVAYGIM GDYGRLLHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20580		COBL10	COBRA-like protein 10 precurso...		Lus10011160 [exp]	0	1
AT1G56090			Tetratricopeptide repeat (TPR)...		Lus10008024 [exp]	8.1	0.6818
					Lus10028050 [exp]	8.2	0.7372
AT5G17220		GST26, TT19, AT...	TRANSPARENT TESTA 19, GLUTATHI...		Lus10023511 [exp]	11.5	0.6732
					Lus10017557 [exp]	15.9	0.6949
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Lus10031191 [exp]	19.0	0.6015
AT3G47570			Leucine-rich repeat protein ki...		Lus10037955 [exp]	22.8	0.5992
AT5G45040		CYTC6A	cytochrome c6A, Cytochrome c (...		Lus10038346 [exp]	26.8	0.6581
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10019169 [exp]	29.1	0.5912
AT1G76140			Prolyl oligopeptidase family p...		Lus10019994 [exp]	30.5	0.6156
					Lus10029164 [exp]	36.1	0.5846

Compare expression of checked genes

Lus10011160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.