Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27120 237 / 2e-77 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043066 [exp] 400 / 9e-141 AT4G27120 252 / 8e-83 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G418900 [exp] 302 / 1e-102 AT4G27120 229 / 4e-74 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF09756 [flax] [poplar] DDRGK DDRGK domain
Representative CDS sequence Show only first row Show all	>Lus10011161 pacid=23167576 polypeptide=Lus10011161 locus=Lus10011161.g ID=Lus10011161.BGIv1.0 annot-version=v1.0 ATGGAGGAACTATTCGTCGCCATTCTCTCTATGCTCCTCGTCGTCGGCCTGATTCCGCTGTACATATGGAAGCGCCGCCAAGATTCTCGATCACCAGATG AGCAGCAAGAAGAGCCTCAGCTTACAACGACTTCTCGATTCATGCTGCAGCAGCCCGAGACCGTGGCGCGGGCAACCGGCGCTTCGCGGACTCGGATGCG GCGGAGACCTTTGGCTGGAGCCAGTTCGTCTAGAGCAGCGGCAGAAATTGATGAAGCGAATGTGGATGAGGGTGACGATTCTGGTAAACCATCAAAGAAG AGGGAGAAGAAACGGCAAGAACGTGAAGCACAAAGACAGGCCATTGAAGCTGCACGTGAGTCAAAGTCGTCAAAACAAGATTATTATGCGGAAATGCGTA GGAAAAAGGAAAAAGAGCATGAGGCGAAAGAGCGTATGCTGGAAAAAGAAGCCAAGGCTCGGAAAGCCAAGGAGGAGAAAGCTGCTGATTTAGAGTTTCA GAAATGGAAAGGGGAGTTTTCAGTAGTTGATGAAGGAACAATGGAGAATGAAGTTGAAGATGGAAATCAGAGTCTGCTATCTGGTTTCGTGGATTACATC AAGAACCAAAAATGTGTTCCTCTGGAAGATCTTGCTGGAGAATTTAAGATGCGTACTCAGGAGTGCATCAACCGAATCACCTCCTTGGAAAGCACGGGAC GGCTTTCAGGTATAATGGACGACAGAGGAAAATACATATACATATCGGTGGAAGAGATGAAGGCGGTAGCAGACTACATCAAGCGCGAAGGGAGGGTAAG CATATCACATTTAGCGAGCAAGTCGAACCAATTCATTGATGTGGAACCTAAACCACAGTTTGTCGAGGAAATAGCTGCTGCAACTTAA
AA sequence Show only first row Show all	>Lus10011161 pacid=23167576 polypeptide=Lus10011161 locus=Lus10011161.g ID=Lus10011161.BGIv1.0 annot-version=v1.0 MEELFVAILSMLLVVGLIPLYIWKRRQDSRSPDEQQEEPQLTTTSRFMLQQPETVARATGASRTRMRRRPLAGASSSRAAAEIDEANVDEGDDSGKPSKK REKKRQEREAQRQAIEAARESKSSKQDYYAEMRRKKEKEHEAKERMLEKEAKARKAKEEKAADLEFQKWKGEFSVVDEGTMENEVEDGNQSLLSGFVDYI KNQKCVPLEDLAGEFKMRTQECINRITSLESTGRLSGIMDDRGKYIYISVEEMKAVADYIKREGRVSISHLASKSNQFIDVEPKPQFVEEIAAAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27120			unknown protein		Lus10011161 [exp]	0	1
AT4G22310			Uncharacterised protein family...		Lus10011790 [exp]	1.0	0.9447
AT1G14740			Protein of unknown function (D...		Lus10030769 [exp]	2.0	0.9370
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029113 [exp]	2.0	0.9411
AT1G54730			Major facilitator superfamily ...		Lus10029966 [exp]	4.2	0.9337
AT5G26610			D111/G-patch domain-containing...		Lus10031446 [exp]	4.6	0.9381
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10004006 [exp]	4.7	0.9288
AT4G04740		CPK23, ATCPK23	calcium-dependent protein kina...		Lus10022624 [exp]	5.2	0.9298
AT3G12550		FDM3	factor of DNA methylation 3, X...		Lus10000948 [exp]	6.0	0.9248
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10015220 [exp]	7.1	0.9249
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Lus10012170 [exp]	8.7	0.9259

Compare expression of checked genes

Lus10011161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.