Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04790 146 / 1e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21880 140 / 2e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043070 [exp] 304 / 1e-95 AT4G04790 601 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G417400 [exp] 178 / 9e-50 AT4G04790 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G133100 [exp] 56 / 2e-08 AT4G04790 380 / 5e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011164 pacid=23167535 polypeptide=Lus10011164 locus=Lus10011164.g ID=Lus10011164.BGIv1.0 annot-version=v1.0 ATGTCTTTCTTGTTTGTTTTTTTTAGCAAACCCCTTCAGTTCAGCATATTGTTTGTAAAACCCTTTGCACTCTTTGTGGATAGTAAAGTTGGTGATCAAG AAAAGGTTCATGAACTCTGCAGTTCAGTTTCTTCTGGTACTGAAACTGAACGTCTCAAGATACATGAAAATTACTTGCTAGCACTTTGTGAAAGTAACCG GAAGAATGACCTTTTGCCACTCCTGGACGTTATTGACTTTGAGGACGCCATGGTAAAATTCAAAGAGCTGCACTCAGAGCTGGTTTCGAAACCTTCTATC GCTTCCTATGAAGAGCTCATTTCCTACTGCTGTGATGAACTTGGGGTAAGGAGGTTGTACCCGTTGATTGTTAATCATGACATCCAACCAACTGTTGAGA CATTCAAGAAAATGATAACTCTTGAGTGTGAGAACAGAAGATACGGAACAGATGAGGCCCGCAGTGAAGTTAAAAGTGCTCTAATCTCTGTTCTGGCCTG CAATGGACAATATTCGGATGCCCTTGCCATGTACAAAGAAACTAAGGCTGTACATGGTGTGGCTTCAAAATCTGTCATCAGTCTAATTGAGCATTTCCCG TCTGATGGAGAGATGGAGAAATTTTGCGACGATGAGATGGCTATGGAAGTGATTTTCGATGAGGTCTGCACTCCTGGCCATGATTATTATTGTTCACTCA CTTGGCAACCTACTTGTCTAATAATCGAAACAATGTTCTTTGCAAATATTGCTGGTACGGAACCAGCAGATGTGGGGACGGGATTGAAGTTGCTAGATAT CATAAAAACTGAACTCGGTCTTAGCCCTTCTCGAACAAGTCTTGATTATCTGTTATATATCTGTGCCAAGGCCAAGGACTTGCCCCATGCACGTTCAGTA TGGAAAGAGTATGAAATAGCTCATCTTCCTTACAACGTCATTAGTTATTTGAGGATGTACCAAGTTCTTATGGCTTCAGGGGGGCGCACCGAGGCGAAAA CCATACTAAAGAAAATCCCGAAAGACGACCCTCATGTCCGGATGATGGTCAAACATGGCAAAAAACTTACTGATCTGAAGTAG
AA sequence Show only first row Show all	>Lus10011164 pacid=23167535 polypeptide=Lus10011164 locus=Lus10011164.g ID=Lus10011164.BGIv1.0 annot-version=v1.0 MSFLFVFFSKPLQFSILFVKPFALFVDSKVGDQEKVHELCSSVSSGTETERLKIHENYLLALCESNRKNDLLPLLDVIDFEDAMVKFKELHSELVSKPSI ASYEELISYCCDELGVRRLYPLIVNHDIQPTVETFKKMITLECENRRYGTDEARSEVKSALISVLACNGQYSDALAMYKETKAVHGVASKSVISLIEHFP SDGEMEKFCDDEMAMEVIFDEVCTPGHDYYCSLTWQPTCLIIETMFFANIAGTEPADVGTGLKLLDIIKTELGLSPSRTSLDYLLYICAKAKDLPHARSV WKEYEIAHLPYNVISYLRMYQVLMASGGRTEAKTILKKIPKDDPHVRMMVKHGKKLTDLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04790			Tetratricopeptide repeat (TPR)...		Lus10011164 [exp]	0	1
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10036186 [exp]	4.2	0.6023
AT1G03890			RmlC-like cupins superfamily p...		Lus10033893 [exp]	32.9	0.5858
AT3G11470			4'-phosphopantetheinyl transfe...		Lus10004722 [exp]	66.3	0.4369
AT1G33340			ENTH/ANTH/VHS superfamily prot...		Lus10032674 [exp]	83.5	0.5040
AT1G06340			Plant Tudor-like protein (.1)		Lus10027325 [exp]	87.4	0.5261
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10025597 [exp]	109.7	0.4892
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10027161 [exp]	113.1	0.4756
AT2G29360			NAD(P)-binding Rossmann-fold s...		Lus10024359 [exp]	114.7	0.4631
AT5G01150			Protein of unknown function (D...		Lus10002340 [exp]	114.9	0.4751
AT1G70460		AtPERK13, RHS10	proline-rich extensin-like rec...		Lus10013013 [exp]	119.6	0.4591

Compare expression of checked genes

Lus10011164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.