Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20740 526 / 0 FIE1, FIS3, FIE FERTILIZATION-INDEPENDENT ENDOSPERM 1, FERTILIZATION-INDEPENDENT ENDOSPERM, Transducin/WD40 repeat-like superfamily protein (.1) AT5G56130 45 / 3e-05 THO3, AtTEX1 Transducin/WD40 repeat-like superfamily protein (.1) AT3G15980 45 / 9e-05 Coatomer, beta' subunit (.1.2.3.4.5) AT5G25150 45 / 9e-05 TAF5 TBP-associated factor 5 (.1) AT1G62020 43 / 0.0003 Coatomer, alpha subunit (.1) AT1G04140 43 / 0.0003 Transducin family protein / WD-40 repeat family protein (.1.2) AT1G79990 43 / 0.0003 structural molecules (.1.2.3.4.5) AT1G52360 43 / 0.0003 Coatomer, beta' subunit (.1.2) AT4G32551 43 / 0.0004 RON2, LUG ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) AT2G21390 43 / 0.0004 Coatomer, alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043071 [exp] 665 / 0 AT3G20740 597 / 0.0 FERTILIZATION-INDEPENDENT ENDOSPERM 1, FERTILIZATION-INDEPENDENT ENDOSPERM, Transducin/WD40 repeat-like superfamily protein (.1) Lus10000495 [exp] 46 / 5e-05 AT1G04140 914 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2) Lus10033092 [exp] 45 / 9e-05 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2) Lus10037525 [exp] 44 / 0.0001 AT1G52360 513 / 3e-176 Coatomer, beta' subunit (.1.2) Lus10011467 [exp] 44 / 0.0002 AT1G52360 1505 / 0.0 Coatomer, beta' subunit (.1.2) Lus10008356 [exp] 42 / 0.0006 AT5G56130 583 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024447 [exp] 42 / 0.0008 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G417300 [exp] 622 / 0 AT3G20740 619 / 0.0 FERTILIZATION-INDEPENDENT ENDOSPERM 1, FERTILIZATION-INDEPENDENT ENDOSPERM, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G470900 [exp] 46 / 2e-05 AT5G56130 586 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 46 / 4e-05 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G250200 [exp] 43 / 0.0002 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2) Potri.013G116900 [exp] 42 / 0.0004 AT1G71840 473 / 6e-167 transducin family protein / WD-40 repeat family protein (.1) Potri.014G193900 [exp] 42 / 0.0005 AT1G04140 904 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G254700 [exp] 42 / 0.0005 AT1G04140 905 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2) Potri.012G052700 [exp] 42 / 0.0005 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G045601 [exp] 42 / 0.0008 AT2G32700 354 / 1e-111 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.003G056300 [exp] 42 / 0.0008 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10011165 pacid=23167557 polypeptide=Lus10011165 locus=Lus10011165.g ID=Lus10011165.BGIv1.0 annot-version=v1.0 ATGGCGAGAATCACATTAGGATGCGAGCCAGTGGTCGGATCTCTCATTCCTTCCAAAAAGAGAGATTACAGGGTCACCAACCGCCTCCAAGAGGGCAAAC GTCCTCTTTACGCCGTTGTCTTCAACTTCATCGACTCTCGTTACTTCAACGTCTTTGCTACCGTCGGCGGCAACCGGGTGACTGTTTATCAATGTCTTGA AGGAGGTGTTATAGCCGTGTTACAGTCTTATGTCGACGAAGATGTAAGAGCTCACAATCTTGTATTTTATCTTCATCAGAAGGATGAGTCGTTCTACACT GTGAGCTGGGCCTGCAATCGTGATGGATCCCCTTTTGTTGTGGCTGGCGGAATCAATGGGATAATCCGTGTTATAGATGCTGGACAGGAGAAGATAGACA AGAGCTTTGTTGGTCATGGGGACTCTATAAACGAGATCAGGACTCAGCCACTGAAACCTTCGCTTGTAGTATCGGCAAGTAAAGATGAGTCGGTTCGCCT GTGGAATGTTCATACTGGAGTTTGCGTCCTCATATTCGCTGGAGCAGGGGGTCATAGGAATGAAGTTTTAAGTGTGGTAGGGCTTCCATCCATTAGACAT GTTGAAAAATCGTTCACATGGACGGACCTTCCTTCAAAGTTCCCCACAAAATACGTGCAGTTTCCGGTATTCATAGCTTCAATTCACTCAAACTACGTCG ATTGTAATCGGTGGCTTGGCGACTTTGTCCTATCAAAGAGCGTAGACAATGAGATTGTGCTGTGGGAGCCGAAAACAAAGGATCAGTCACCTGGGGAGGG GACAGTTGACATCCTTCAAAAGTATCCTGTTCCGGAATGCGACATCTGGTTCATCAAGTTTTCATGTGATTTTCACTTCAATGCGGCGGCTATAGGAAAC AGAGAAGGGAAGATCTTTGTGTGGGAGTTGCAAACTAGTCCCCCGAGTCTCATAGCAAGGTTGTCTAACGTTCAATCCAAATCTCCAATCAGGCAGACTG CAATGTCATTTGATGGCAGCACTATTCTTAGCTGCTGCGAGGATGGAACAATATGGCGTTGGGATGCAATATCATCATCGTCTTCATCTTCATCTTCTCA AGTATAG
AA sequence Show only first row Show all	>Lus10011165 pacid=23167557 polypeptide=Lus10011165 locus=Lus10011165.g ID=Lus10011165.BGIv1.0 annot-version=v1.0 MARITLGCEPVVGSLIPSKKRDYRVTNRLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAVLQSYVDEDVRAHNLVFYLHQKDESFYT VSWACNRDGSPFVVAGGINGIIRVIDAGQEKIDKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVHTGVCVLIFAGAGGHRNEVLSVVGLPSIRH VEKSFTWTDLPSKFPTKYVQFPVFIASIHSNYVDCNRWLGDFVLSKSVDNEIVLWEPKTKDQSPGEGTVDILQKYPVPECDIWFIKFSCDFHFNAAAIGN REGKIFVWELQTSPPSLIARLSNVQSKSPIRQTAMSFDGSTILSCCEDGTIWRWDAISSSSSSSSSQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Lus10011165 [exp]	0	1
AT1G03180			unknown protein		Lus10000654 [exp]	3.2	0.8362
AT3G08880			unknown protein		Lus10022668 [exp]	3.5	0.8248
AT1G19690			NAD(P)-binding Rossmann-fold s...		Lus10024280 [exp]	5.8	0.8180
AT4G33060			Cyclophilin-like peptidyl-prol...		Lus10024999 [exp]	6.5	0.8468
AT3G29270			RING/U-box superfamily protein...		Lus10015732 [exp]	6.7	0.8209
AT2G34050			unknown protein		Lus10013954 [exp]	7.5	0.8337
					Lus10028086 [exp]	8.5	0.8328
AT4G36850			PQ-loop repeat family protein ...		Lus10022491 [exp]	8.6	0.7897
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10017682 [exp]	9.5	0.8565
AT5G28060			Ribosomal protein S24e family ...		Lus10015941 [exp]	10.0	0.8428

Compare expression of checked genes

Lus10011165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.