Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20720 1214 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043072 [exp] 2034 / 0 AT3G20720 1376 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G132800 [exp] 1382 / 0 AT3G20720 1468 / 0.0 unknown protein Potri.001G417200 [exp] 1342 / 0 AT3G20720 1456 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011166 pacid=23167543 polypeptide=Lus10011166 locus=Lus10011166.g ID=Lus10011166.BGIv1.0 annot-version=v1.0 ATGGGACTCCCGCCGGCCATTACTGTCACCAAGGCCAAAGTCGCCAAATTCGAGATTATTCTTCCCTATGTGAGCAATGTGCAAACGGAGCCGATTGTTG TCCAAATCGATAAGCTTGATCTGGTTTTCAAGGAGAACCGTGATTGGGATGCACCTACCAATTCTCAATGCCAAGGTTCCACTTCTTCTTCAAGCACCAC CAAAGTTAGTGGTAGTGGGTATGGTTTTGCTGACAAGATTGCTGATGGAATGACGATTAAGGTTACCACTGTGAATCTTTTACTTGAGACACAAGGTGGT GCTGGTCGAGGAGGGGAAGCTGCTTGGGCACCACCTATGGCGTCAATAACAATACGTAACCTTGTTTTGTATACTACAAATGAAAACTGGGAGGTTGTAA ATCTCAAGGATGCACGTGACTTCTCCAATGACAAAGCTTACATATACATCTTCAAGAAACTGGAATGGGGATCTTTATCTATTGATCTTTTGCCCCATCC TGATATGTTCACCGAAGCGAATATAGAACGTTACCAGGAGAGAAAGAATCAGAGAGATGATGATGGTGCAAAGCGCGTTTTCTTTGGTGGAGAACGATTC CTAGAAGGAATATCCGGAGAAGCTTATATCACAGTGCAGCGAACTAACCAAAATGATCCTCTCGGTCTAGAGGTTCAGCTGCATGTTACAGAAGCTGTTT GCCCTGCACTGAGTGAACCAGGACTTCGTGCCCTCCTCCGCTTCTTCACTGGTTTGTACGTGTGTCTTAACAGAGGGGATGTGGATCTGAATGCTCAGCA GTCATCCACAGAAGCAGCTGGACGTTCTCTTGTCTCTATTGTTGTCGACCACGTATTTCTCTCAATTAAAGATGCTGAGTTCCAGCTTGAACTTCTGATG CAGTCACTCCACTTTTCAAGGGCAACAGTTTCTGATGGAGAAGTTGCCAAAAATTTGACTAAGATAATGATTGGAGGATTCTTCTTGAGAGATACATTTT CTCGACCTCCTTGTACTCTAATACAACCATCCATGGTGGCTGTTGTTGATAGTGTTACACAGAGTCCTGCCTTTGCTGTGAACTTCTGTCCTCCAATATG TCCTATTGGAGAACAACAGTGGCAATTGATTGGGGATACTCCTTTGATTTCCCTCTATTCTCTTCAAGTCCAGCCTTCTCCAGTGCCTCCATCTTTTGCT TCTCAAACTCATATTGTCTGCTTGCCTCTCACCATTTACCTTCAAGAGGAATCATGTTTGAGAATATCTTCCTTCCTAGCTGATGGTATCGTTGTCAATC CTGGGGATGTTTTGCCTCAAATATCTGTTAACTCCATGAACTTCTCACTAAAGGAGTTAGATTTTACAGTCCCCTTAGAAATTAGTGGTTCAAGTACTCA CGGAAATAATGGGAACTTTGGTAGCCAGGGTTCCTTCACTGGAGCAAGGCTTCACATTGAAAACTTGTTCTTCTCAGAGTCCCCTTCTCTAAAACTCAGG CTCTTGAGCCTTGAAAAGGATCCTGCATGCTTTTGTCTCTGGCCAGGTCAGCCGATTGATGCCAGCATGAAAAAATGGATGGCTGGAGCCTCATGCATTA GTTTGTTTCTCGAAACATCTGAACCATTAAAATCTCCGGCACTTACTTCTGAGCTGTGGAGATGTGTTGAAATGAAAGATGCTTCAATTGAGATGGCCAT GGTGTCTGCTGATGGCAGTCCACTCACAAATATTCCTCCTCCTGGCGGGATTGTTAGGATAGGGGTCGCTTGTCAACAGTACATATCAAACACTTCTGTT GAGCAGTTGTTTTTCGTCCTGGATTTATATGCATACCTTGGAACAGTTGGTGAGAAGATTGCCTTGGTTGGCAAAGAGAGTAAAACAAAGAGACATCAAT ATAAATCCTCAAGTGTCAGGCTATTGGACAAGGTTCCAGCTGATACTGCAGTGAGCCTGACGGCGGATAACCTTCAGCTCCGATTTTTGGAATCCTCTAC TACGAAAGCCGAGGGAAAACCTCTTGTTCAGTTTGTCGGGGAGGATCTTTTTAGTAAAGTCGTTCATAGAACCCTTGGTGGTGCTGTTGCTGTTTCATCT GTTCTGAGGTGGCAGAGCATTGAGGTAGACTGTGTCCAGGCTGCAGACGAATCAACTTCAAGCGCTGTTGAGAATGGCAACTTGAAAGGTGCCAACGGGT ATCCTGATCTTAGACCTGTCCTTTGGGTTCATAAGGAGATCAAGCTGAAAACCAATGGGAATTCTTCTCTGGTACCTTTTATAAATGTGAGCGTGGAACA TATGATTCCATTCAGTGAAATAGATAGAGAGTGTCACAGTTTAGGTGTATCAGCCTGCATATATGGTCTCCGTCTTGGTGGAGGAATGAATTATGCTGAA ACCTTGCTGCACCGTTTTGGGATACTTGGGCCTGATGGTGGTCCAGGGGAGGGACTGTCTAAAGGATTACAGAACTTGTCAGCGGGACCACTATCAAAGC TTTTCAAAGCATCATCTCTGATTCCTAAGGACGTTGGAGAAGATGGAAGTTCAGGAAGTGGCAATGAAGGTGGATTGTTGCATCTTGGAATTCCAGATGA TATTGATGTGCGTATAGAATTCAAAGACTGGCTATTTGCTCTTGAAGGCCAGCAGGAAATAGGATATGGTTCGTCATACTTCAATCATGACAGCATAGGT AGAGAGCAGAGGAGTTGGCACGCTACTTTCCAAAGTTTCCTGGTGAAGGCAAAAAGTTGTCTGCAAAATGGTGGAAATTCAGATGTGCGGAAACATCCTA TAGATTTGGTAACGGTTGGTGTGGAAGGTTTACAGATACTGAAGCCACATTTACAAAAACATACTACAGTATCTGAAAATGGGATCAAAGGAGTTGCCCA GTCATCTGAAGGGCTCGATCTCGAGGTTCGCTTGGTGATGACAGAAGATGCGGATGATGTCTACGAAATGGACAAGTGGGAAATGGAGAATTTCAAGTTC TCTGTCAAGCAACCGTGTAAAACAGAGATCGATGCAATGGGTAGGATTACAGCAGGTGTCCTGAGGCTCCTGAAGCTGGAACACTCCATTGGTCCGGGAG CCATCTATCAGCTTAATAACCTTGGGAGCGAGCGACTTGACAAGATTTTCAGTCCAGAAAAGCTCAGCAGGGTTGGTATCCGTGGCGAAGGAAGTCAGGA GAAGAGGAGAGTTGAAGCAACAGTTAGTTTGGTGGAGGAAGCAGTTGCAGATTCGGAAGCCAAATGCGCTGCCATTATGACCAATTTGTCAAGTCCGGAC GCATCGTTGCAGAATCTTGCCGATATTATGCAGGTATGTCAGAACCTTGAAAGCATGAAGAGCTTGCTGACGCAATTACGAACTCGGATTTGA
AA sequence Show only first row Show all	>Lus10011166 pacid=23167543 polypeptide=Lus10011166 locus=Lus10011166.g ID=Lus10011166.BGIv1.0 annot-version=v1.0 MGLPPAITVTKAKVAKFEIILPYVSNVQTEPIVVQIDKLDLVFKENRDWDAPTNSQCQGSTSSSSTTKVSGSGYGFADKIADGMTIKVTTVNLLLETQGG AGRGGEAAWAPPMASITIRNLVLYTTNENWEVVNLKDARDFSNDKAYIYIFKKLEWGSLSIDLLPHPDMFTEANIERYQERKNQRDDDGAKRVFFGGERF LEGISGEAYITVQRTNQNDPLGLEVQLHVTEAVCPALSEPGLRALLRFFTGLYVCLNRGDVDLNAQQSSTEAAGRSLVSIVVDHVFLSIKDAEFQLELLM QSLHFSRATVSDGEVAKNLTKIMIGGFFLRDTFSRPPCTLIQPSMVAVVDSVTQSPAFAVNFCPPICPIGEQQWQLIGDTPLISLYSLQVQPSPVPPSFA SQTHIVCLPLTIYLQEESCLRISSFLADGIVVNPGDVLPQISVNSMNFSLKELDFTVPLEISGSSTHGNNGNFGSQGSFTGARLHIENLFFSESPSLKLR LLSLEKDPACFCLWPGQPIDASMKKWMAGASCISLFLETSEPLKSPALTSELWRCVEMKDASIEMAMVSADGSPLTNIPPPGGIVRIGVACQQYISNTSV EQLFFVLDLYAYLGTVGEKIALVGKESKTKRHQYKSSSVRLLDKVPADTAVSLTADNLQLRFLESSTTKAEGKPLVQFVGEDLFSKVVHRTLGGAVAVSS VLRWQSIEVDCVQAADESTSSAVENGNLKGANGYPDLRPVLWVHKEIKLKTNGNSSLVPFINVSVEHMIPFSEIDRECHSLGVSACIYGLRLGGGMNYAE TLLHRFGILGPDGGPGEGLSKGLQNLSAGPLSKLFKASSLIPKDVGEDGSSGSGNEGGLLHLGIPDDIDVRIEFKDWLFALEGQQEIGYGSSYFNHDSIG REQRSWHATFQSFLVKAKSCLQNGGNSDVRKHPIDLVTVGVEGLQILKPHLQKHTTVSENGIKGVAQSSEGLDLEVRLVMTEDADDVYEMDKWEMENFKF SVKQPCKTEIDAMGRITAGVLRLLKLEHSIGPGAIYQLNNLGSERLDKIFSPEKLSRVGIRGEGSQEKRRVEATVSLVEEAVADSEAKCAAIMTNLSSPD ASLQNLADIMQVCQNLESMKSLLTQLRTRI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20720			unknown protein		Lus10011166 [exp]	0	1
AT1G05960			ARM repeat superfamily protein...		Lus10001161 [exp]	1.0	0.8857
AT3G20720			unknown protein		Lus10043072 [exp]	2.4	0.8750
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10001011 [exp]	3.2	0.8475
AT3G02065			P-loop containing nucleoside t...		Lus10020088 [exp]	4.5	0.8675
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Lus10031369 [exp]	5.2	0.8705
					Lus10029801 [exp]	6.0	0.8537
AT5G21990		OEP61, TPR7	tetratricopeptide repeat 7, ou...		Lus10019379 [exp]	6.3	0.8257
AT5G28850			Calcium-binding EF-hand family...		Lus10011811 [exp]	6.9	0.8639
AT5G23490			unknown protein		Lus10019229 [exp]	7.5	0.8590
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10025315 [exp]	7.5	0.8630

Compare expression of checked genes

Lus10011166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.