Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54680 252 / 7e-85 bHLH bHLH105, ILR3 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G51070 204 / 4e-66 bHLH bHLH115 basic Helix-Loop-Helix 115, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G14410 123 / 4e-34 bHLH bHLH104 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G23210 120 / 2e-32 bHLH bHLH34, bHLH034 basic Helix-Loop-Helix 34, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G19860 69 / 2e-13 bHLH bHLH121 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G36060 65 / 2e-12 bHLH bHLH11, bHLH011 basic Helix-Loop-Helix 11, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G47640 46 / 5e-06 bHLH PYE, bHLH047, POPEYE, PYE1 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043076 [exp] 359 / 4e-127 AT5G54680 330 / 8e-116 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10020069 [exp] 169 / 2e-52 AT5G54680 231 / 5e-77 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021199 [exp] 128 / 2e-36 AT4G14410 221 / 2e-72 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10041148 [exp] 127 / 4e-36 AT4G14410 211 / 1e-68 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10022186 [exp] 127 / 4e-36 AT4G14410 218 / 4e-71 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10021876 [exp] 125 / 1e-35 AT4G14410 214 / 4e-70 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10041908 [exp] 62 / 2e-11 AT3G19860 224 / 2e-72 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10028456 [exp] 62 / 5e-11 AT3G19860 225 / 2e-72 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10024233 [exp] 51 / 1e-07 AT3G47640 187 / 4e-59 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G132400 [exp] 242 / 6e-81 AT5G54680 222 / 7e-73 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G416600 [exp] 225 / 7e-74 AT5G54680 223 / 4e-73 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G031000 [exp] 220 / 2e-72 AT5G54680 264 / 2e-89 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G031800 [exp] 204 / 9e-66 AT5G54680 226 / 8e-75 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G072900 [exp] 133 / 1e-38 AT4G14410 230 / 7e-76 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.008G165700 [exp] 130 / 2e-37 AT4G14410 181 / 1e-56 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.005G113400 [exp] 76 / 7e-16 AT3G19860 211 / 1e-66 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.009G129600 [exp] 75 / 1e-15 AT3G19860 238 / 2e-76 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.004G168100 [exp] 71 / 4e-14 AT3G19860 250 / 4e-82 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.015G142700 [exp] 52 / 9e-08 AT3G47640 170 / 1e-52 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10011167 pacid=23167563 polypeptide=Lus10011167 locus=Lus10011167.g ID=Lus10011167.BGIv1.0 annot-version=v1.0 ATGGTTTCCCCGGAAAACACCAACTGGCTCATGGAGTACGGTCTGATCGATGATGTCTCCATCCCCGATCCCAATTTCTCCGTCCCGGTCAACGGTTTTT CCTGGCCTGTCCATACCCTAAACGCTCCCTCTAATGCTGGTGCGGAACTTGATGCTTCATTTGGTGATTCTGAAGGCCAGAGAGAATCCAGTTCCAAGAA AAGGGGTAGATCTGAGTCATGTAGTGCTTCAAGCTCTAAAGCATGTAGGGAGAAGTTGCGGAGGGATAGGCTAAACGACAAGTTTCTGGAGTTGGGCACT ACACTGGAACCTGGTAGACCTCCTAAAACTGACAAGGCAGCTATTTTAGTTGATGCTGTCCGAATGGTGAACCAATTACGTGGGGAAGCTCAGAAGCTGA AGGACTCCAATTCGAATCTTCAAGAGAAGATTAAGGAGTTGAAGGTCGAGAAGAACGAGCTTCGTGATGAGAAGCAGCGTCTGAAAGCAGAGAAAGAGAA GCTGGAACAGCAATTGAAAACCATGAACGCCCAACCTAGCTATATGCCTGCTCCCCCGGCTATTCCTTCTGCATATGCTGGCCAAACACCAGGCAACAAG CTGGTCCCTTTCATGGGTTACCCAGGTGTTGCCATGTGGCAGTTCATGCCTCCGGCTGCAGTGGATACCTCGCAGGATCATGTTCTTCGACCCCCGGTTG CTTAA
AA sequence Show only first row Show all	>Lus10011167 pacid=23167563 polypeptide=Lus10011167 locus=Lus10011167.g ID=Lus10011167.BGIv1.0 annot-version=v1.0 MVSPENTNWLMEYGLIDDVSIPDPNFSVPVNGFSWPVHTLNAPSNAGAELDASFGDSEGQRESSSKKRGRSESCSASSSKACREKLRRDRLNDKFLELGT TLEPGRPPKTDKAAILVDAVRMVNQLRGEAQKLKDSNSNLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQLKTMNAQPSYMPAPPAIPSAYAGQTPGNK LVPFMGYPGVAMWQFMPPAAVDTSQDHVLRPPVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10011167 [exp]	0	1
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10043076 [exp]	1.0	0.9314
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Lus10000555 [exp]	2.6	0.7735
AT5G55130		SIR1, CNX5	SIRTINOL RESISTANT 1, "co-fact...		Lus10000697 [exp]	4.5	0.7777
AT5G17900			microfibrillar-associated prot...		Lus10005672 [exp]	5.1	0.8165
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10021746 [exp]	7.3	0.7850
AT2G19270			unknown protein		Lus10020014 [exp]	8.2	0.7352
AT2G28105			unknown protein		Lus10021424 [exp]	8.7	0.7749
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Lus10012902 [exp]	8.9	0.7674
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10032561 [exp]	10.1	0.7736
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10007936 [exp]	12.4	0.7584

Compare expression of checked genes

Lus10011167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.