Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54650 586 / 0 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT4G15200 467 / 3e-152 AFH3 formin 3 (.1.2) AT5G67470 375 / 1e-115 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT3G25500 363 / 4e-110 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT2G43800 349 / 4e-106 Actin-binding FH2 (formin homology 2) family protein (.1) AT3G05470 349 / 4e-106 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G70140 273 / 2e-79 ATFH8 formin 8 (.1) AT1G59910 268 / 3e-76 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G48360 231 / 5e-64 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G24150 207 / 4e-56 ATFH4, FH4 formin homologue 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043077 [exp] 837 / 0 AT5G54650 636 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10036609 [exp] 673 / 0 AT5G54650 581 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10035827 [exp] 664 / 0 AT5G54650 586 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031585 [exp] 505 / 5e-166 AT4G15200 553 / 0.0 formin 3 (.1.2) Lus10015091 [exp] 504 / 4e-159 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10039705 [exp] 478 / 7e-155 AT5G54650 496 / 1e-163 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10018494 [exp] 446 / 2e-143 AT5G54650 464 / 6e-151 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10011524 [exp] 374 / 1e-114 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10025195 [exp] 372 / 1e-114 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G131700 [exp] 649 / 0 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.001G416100 [exp] 646 / 0 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G119900 [exp] 537 / 1e-177 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G054900 [exp] 382 / 4e-118 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.007G140200 [exp] 377 / 5e-116 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.017G009900 [exp] 367 / 3e-112 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.014G174700 [exp] 368 / 2e-111 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.002G240232 [exp] 362 / 3e-109 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.013G017900 [exp] 357 / 1e-108 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.005G026300 [exp] 347 / 9e-105 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10011168 pacid=23167569 polypeptide=Lus10011168 locus=Lus10011168.g ID=Lus10011168.BGIv1.0 annot-version=v1.0 ATGCGGATTCAGCAGCTAATAGTTCAGGTGAATTCAAGGTTTTTGTTACTTCTTCCCTTCCTGCTATGCGTTTCCGCCGTGCGGAGCTTCCAACACAGAG AGGCTGCAGAGGGATTACTCCTCGCCAAATTGTTCAACCCGGTTACAGAGGAGGTGGATGAGACTGTGGCTGAACTGCTATGGGACAATTGTAAGCTAGA TTTGAAGGAAGTAGATGAAGATCTCAACTTTTGTTTCCTGGAAGAAACATCTGGAAGTCCCAGTATGCTTAAACCAAAGGGTTGGTCATTGTCAAAACAA AATATGCAGCAGCTGTTCAAAGCTCCACACCCACAACTGAGACAAACTCTTTTAGATTGTATACGAAGGAATGATCTTGCATATACTGTCTCTGGTGAGG AACGTGGCTCTTCAGTTCCTACAAGGACATTGCGAGAAAGCAGTACAAATCCACCAACACATTCGTATCTTTCCAGTGTGAAGCCAACTTCCAGGAAAAT TCATGCAGCAGCCGAAGAAAGCGAGGCTTCTGAAATTGAAGAGGAGGTCGAAGGAAGCAGCGAGGATACCAAAATTATCATTGCAGTAGTTGTGACTGCT GTGATAACATCCATTCTGGCAGCTCTTTTTTTCTTCTGCTGTTTGAGAGTTCTTGGAACGGGCACCGGAGATGGGCTAAACGATGACAAGCCACTTCTTA GTCTCAGTCTAAGCAACTCTACTAACTCTTCATACAAGTCTTTCAGTTTAGGAGGTTCTTTCACAGAAGACAAGCTTGATTCTCTATCACTAGCCAGTAA TTCAGGTCATCACACAAAGAATTCATCTATTGATGGAAACATCCTCTCTGATGATGTTATCCTTGCCTCATTGGATGGCAATGGCGTTGCCACTACATCC TCGTCTCAATCTGTTGATACTGGTTTGCTACCACCTCCTCCAGGAAGGAATCCTGGTCTGCCTCCCCTGAAGCCTCCTCCTGGGAGGGCAATTCCTCTTC CACCCGAACCGCCAGCTCCTCGTAGGCCTCCTAACAAGCCTGCACCACCTCCGCCACCTGCACCACCTAAGCCTCCACCTTCAAAAGCTTCTCCCAGTGC TCCACCTGCTGGACCACCTGCTGGACCACCTGCTGGACCACCACCTCCTCCACCTCCTGCTCCTCGTGGCAAATCAGGCGCACCGCCCCCTCCAGGGGGC CCACCGCCGCCGGGGCCTCCCCCGCCAAGGGGTGGTCCCGGTCCTCCTCGTGGACCACCACCCTTGGGTTCGAAAGTTCCTAGAGCTCCTGGTATGAGGG GTCCGGGCGGAGATGATAATAAAGCCAAGCTTAAGCCTTTCTTCTGGGACAAAGTTCTTGCCAATCCTGATCAATCAATGGTCTGGCATCAGATTAAAGC AGGATCTTTCCAGTTCAACGAGGAGATGATAGAAAATCTATTTGGATATACACAGCCTGAAAAAAGCAAAATGGATAGGAAAAGGCAACCTTCACAAGAA AATGTTCCACAGTTCGTTCAGATTTTGGATCCCAAAAAGGCTCAAAATTTATCGATTCTACTTCGTGCTTTGAATGTTACTACAGAAGAAGTTTCTGATG CCTTGCTTGAAGGAAATGAGCTTCCTGCTGAGCTTATTCAAACTTTGTTGAAGATGGCACCGACGTCAGACGAGGAACTGAAACTTAGGCTGTACAGTGG TGAACTTTCTCAGCTGGGACCTGCTGAGCGGTTCCTCAAGGCATTGGTTGATATTCCCTTTCCTTTTCATCGAATGGAAGCACTCCTTTTCATGGGCACG CTAGAGGAAGAGATCTCCAATGCCATGGATTCCTTCCACACGTTTGAGGTTGCGTCTAAAGAACTCAGGAACAGCAGGTTGTTCCTCAAGCTTCTAGAAG CTGTACTGAAAACTGGAAACCGAATGAACGACGGTACATTTCGTGGCGGAGCATCGGCATTCAAGCTCGACACTCTTCTGAAATTAGCAGATGTCAAGGG GGTTGATGGAAAGACCACACTCTTGCATTTTGTGGTTCAAGAGATAGTTCGTTCGGAAGGAGTGAGGGCTGCCCGTGCAAGGAGAGAAAGTAGGAGTTTC TCTAACGTGAGTGTCAAGACAGAAGATCTTCTCGAAGAGATTTCTCCGGACAACGAAGACCACTACCGCGCCCTCGGTCTTCAAGTGGTCTCTCGTTTGA GCAGCGAACTGGAAAATGTCAAGAAAGCAGCGGCTATAGATGCCGACAACTTGACAGGAACTGTTGCTAAACTCGGCCATGCGCAGCTGAAAACTCGAGA CTTTTTGAACAAAGAAATGAAGGATATAGATGAAGACAGTGGGTTTCATGAAGTGCTGAAGAGCTTTGTACAGAGTTCGGAGGGCGATGTTGTGTCCCTG CTCGAGGAAGAAAAGAGGATTACAGCACTGGTGAAGAGCACTGGCGATTATTTCCATGGAAACTCGGGAAGGGATGAAGGGTTGCGTTTGTTTACCATCG TAAGGGACTTCTTAGTGATCTTGGACAAGGTGTGCAAAGAAGTGGGGGAAGCACAGAAGAAATCGGCCACCAAAGCGCTTAAGAAAGAGACTTCTACTGC TTCATCGAACTCAAACTCGACTAATACGCATAGCCAGCCTCCTCCTCCGACTGATCCTCGAACGAAGCTGATGCCTGCAATTGCAGAGAGAAGGGTGCAG GATTCCAGCTCTAGCTCAGACAGTTCAGACGATTAG
AA sequence Show only first row Show all	>Lus10011168 pacid=23167569 polypeptide=Lus10011168 locus=Lus10011168.g ID=Lus10011168.BGIv1.0 annot-version=v1.0 MRIQQLIVQVNSRFLLLLPFLLCVSAVRSFQHREAAEGLLLAKLFNPVTEEVDETVAELLWDNCKLDLKEVDEDLNFCFLEETSGSPSMLKPKGWSLSKQ NMQQLFKAPHPQLRQTLLDCIRRNDLAYTVSGEERGSSVPTRTLRESSTNPPTHSYLSSVKPTSRKIHAAAEESEASEIEEEVEGSSEDTKIIIAVVVTA VITSILAALFFFCCLRVLGTGTGDGLNDDKPLLSLSLSNSTNSSYKSFSLGGSFTEDKLDSLSLASNSGHHTKNSSIDGNILSDDVILASLDGNGVATTS SSQSVDTGLLPPPPGRNPGLPPLKPPPGRAIPLPPEPPAPRRPPNKPAPPPPPAPPKPPPSKASPSAPPAGPPAGPPAGPPPPPPPAPRGKSGAPPPPGG PPPPGPPPPRGGPGPPRGPPPLGSKVPRAPGMRGPGGDDNKAKLKPFFWDKVLANPDQSMVWHQIKAGSFQFNEEMIENLFGYTQPEKSKMDRKRQPSQE NVPQFVQILDPKKAQNLSILLRALNVTTEEVSDALLEGNELPAELIQTLLKMAPTSDEELKLRLYSGELSQLGPAERFLKALVDIPFPFHRMEALLFMGT LEEEISNAMDSFHTFEVASKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGASAFKLDTLLKLADVKGVDGKTTLLHFVVQEIVRSEGVRAARARRESRSF SNVSVKTEDLLEEISPDNEDHYRALGLQVVSRLSSELENVKKAAAIDADNLTGTVAKLGHAQLKTRDFLNKEMKDIDEDSGFHEVLKSFVQSSEGDVVSL LEEEKRITALVKSTGDYFHGNSGRDEGLRLFTIVRDFLVILDKVCKEVGEAQKKSATKALKKETSTASSNSNSTNTHSQPPPPTDPRTKLMPAIAERRVQ DSSSSSDSSDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10011168 [exp]	0	1
AT2G23530			Zinc-finger domain of monoamin...		Lus10023846 [exp]	5.2	0.8103
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10027980 [exp]	14.9	0.8389
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10012075 [exp]	17.9	0.7375
AT4G24670		TAR2	tryptophan aminotransferase re...		Lus10027678 [exp]	23.4	0.7778
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014380 [exp]	25.3	0.8208
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10012654 [exp]	30.2	0.7706
AT4G38790			ER lumen protein retaining rec...		Lus10026285 [exp]	39.4	0.7391
AT1G54460			TPX2 (targeting protein for Xk...		Lus10006563 [exp]	39.7	0.7386
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10023579 [exp]	46.8	0.7090
AT5G48385			FRIGIDA-like protein (.1)		Lus10027765 [exp]	52.2	0.8101

Compare expression of checked genes

Lus10011168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.