Plant FIBer expression Database

Lus10011169 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G14910 681 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043078
[exp]
897 / 0 AT3G14910 662 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G390700
[exp]
724 / 0 AT3G14910 673 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10011169 pacid=23167561 polypeptide=Lus10011169 locus=Lus10011169.g ID=Lus10011169.BGIv1.0 annot-version=v1.0
ATGTCGAGGCGGAGCCACACCAGAGAATTGGGGTGTATATCGTGCAGTGAGCTGGAAGATCTAGGCGCAGGAAAGGAAGGCTGGCTGGTGGACAATCCTA
ACCTTCTCTGCGCACTCGACACGCACTCCCTCGCCCTCGCCAATAAGTATCTGGTTGTGATTACAGGATGGGACAGTGGCCCTCGTTTCAAGATCCGGCC
GGAACTGTCCCCGATCGAGTCGGAGCATATTACTGCTCTGGAGTGGTTGGCGTTCGATGAGATTCGGGCGATTGCCGTGGGAACTTCTTGCGGGTACTTG
CTGGTTTATTCTCTGGATGGGCAGTTGATTCATCGACAGTTTGTCTATTCGGCTCGAATTTTGAAACTAAGAGTCCGGGGAACTAAGAAAGATATGATGA
GTGATACATCCCCTGCAGAGGAGGTTTCTGTCGTTTTACCTGGCGTTATTGCTCGTTTCGATGGAACTGTTATTCAGAACTTACTTGGAGATTGGTTTCA
AGATGTGAATTCCCGGTTTTGGGATGAAAATCCAAGAAAGAAAGAAGCAGAAGACCTTGGTAACTCCCACAAGAGCTTACCTTATCAACTATGGAGTGTT
AGCAAGCACGGATTGTGTATCGACGCAGCAATTACTGGTGTTATGCCACCTCCCCTGCTTGAAGTTCAGTCAAGTCAACGTTACTTTTGCGCAGTCACTG
TGGGAGAGGATGCAGTAATCTCTGCTTACAGACTTTCAGAAGATAGAAGCCGGTCTTTAGTTGGTGCTATTCTGTCGAAAGTTGTTCCTGCAACGTTCTC
AACAATTGCTTCTTTTTCTAAAATGATTTGGCGGAGCGAACAATCATCACCAAAAAAGACAGAACCCAAACCGCAGTCATTTGCTAAAGCATCTGTTGTG
ACTTGCTTGAAAGATAAACCAAGGAAAGGGGAGAAATTAACATTGTCGCCGAGTGGTACGTTGGCCGCGATTACAGACTCTCTTGGCCGTATATTGCTGT
TAGACACTCAGGCCCTAGTAGTGGTTAGACTATGGAAGGGATATCGTGATGCGAGGTGTTTGTTCATGGAAATGCTGGTTAATAAGGATAAAATAGGATC
AAGTTCATCGTATTTCCAACCAGTAAAGAGTGATTATTGCCTCTGTCTAGCTATTCATGCACCACGGAAAGGAATCGTAGAGGTGTGGCAGATGAGAAGC
GGAGAGCGTATTCTGGCAGTACAGTGTGGGAAGGGGAGTAAAATATTGCAACCGACGTACAGGTTTGGATTGGTAATGGACTCTTCTTCTCCTTACGTTC
CTCTGGAAGTGTTCTTGTTAGATGGAGAATCTGGTCTGTTGTCAGTATTGAACCGCTCACTTCACTGA
AA sequence
>Lus10011169 pacid=23167561 polypeptide=Lus10011169 locus=Lus10011169.g ID=Lus10011169.BGIv1.0 annot-version=v1.0
MSRRSHTRELGCISCSELEDLGAGKEGWLVDNPNLLCALDTHSLALANKYLVVITGWDSGPRFKIRPELSPIESEHITALEWLAFDEIRAIAVGTSCGYL
LVYSLDGQLIHRQFVYSARILKLRVRGTKKDMMSDTSPAEEVSVVLPGVIARFDGTVIQNLLGDWFQDVNSRFWDENPRKKEAEDLGNSHKSLPYQLWSV
SKHGLCIDAAITGVMPPPLLEVQSSQRYFCAVTVGEDAVISAYRLSEDRSRSLVGAILSKVVPATFSTIASFSKMIWRSEQSSPKKTEPKPQSFAKASVV
TCLKDKPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDARCLFMEMLVNKDKIGSSSSYFQPVKSDYCLCLAIHAPRKGIVEVWQMRS
GERILAVQCGKGSKILQPTYRFGLVMDSSSPYVPLEVFLLDGESGLLSVLNRSLH

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G14910 unknown protein Lus10011169
[exp]
0 1
AT4G38240 GNTI, CGL1 N-ACETYLGLUCOSAMINYLTRANSFERAS... Lus10001389
[exp]
6.2 0.8704
AT5G60580 RING/U-box superfamily protein... Lus10022585
[exp]
9.8 0.8561
AT1G55730 ATCAX5 cation exchanger 5 (.1.2) Lus10034853
[exp]
10.6 0.8513
AT4G32160 Phox (PX) domain-containing pr... Lus10002925
[exp]
12.6 0.8624
AT4G38240 GNTI, CGL1 N-ACETYLGLUCOSAMINYLTRANSFERAS... Lus10022994
[exp]
13.1 0.8697
AT3G29400 ATEXO70E1 exocyst subunit exo70 family p... Lus10031956
[exp]
19.0 0.8350
AT4G18880 HSF AT-HSFA4A ,HSF ... ARABIDOPSIS THALIANA HEAT SHOC... Lus10015237
[exp]
22.1 0.8558
AT5G12200 PYD2 pyrimidine 2 (.1) Lus10026817
[exp]
27.8 0.8557
AT5G01800 saposin B domain-containing pr... Lus10022750
[exp]
28.1 0.8442
AT4G21220 AtLpxD2 lipid X D2, Trimeric LpxA-like... Lus10020067
[exp]
28.4 0.8277

Lus10011169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.