Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14930 605 / 0 HEME1 Uroporphyrinogen decarboxylase (.1.2.3) AT2G40490 396 / 3e-136 HEME2 Uroporphyrinogen decarboxylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043079 [exp] 794 / 0 AT3G14930 608 / 0.0 Uroporphyrinogen decarboxylase (.1.2.3) Lus10030544 [exp] 394 / 3e-135 AT2G40490 619 / 0.0 Uroporphyrinogen decarboxylase (.1) Lus10012892 [exp] 393 / 5e-135 AT2G40490 621 / 0.0 Uroporphyrinogen decarboxylase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G390800 [exp] 627 / 0 AT3G14930 627 / 0.0 Uroporphyrinogen decarboxylase (.1.2.3) Potri.019G048900 [exp] 407 / 1e-140 AT2G40490 633 / 0.0 Uroporphyrinogen decarboxylase (.1) Potri.011G109800 [exp] 392 / 2e-136 AT3G14930 386 / 2e-134 Uroporphyrinogen decarboxylase (.1.2.3) Potri.013G083200 [exp] 219 / 1e-69 AT2G40490 319 / 3e-109 Uroporphyrinogen decarboxylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0160 [flax] [poplar] Methionine_synt PF01208 [flax] [poplar] URO-D Uroporphyrinogen decarboxylase (URO-D)
Representative CDS sequence Show only first row Show all	>Lus10011170 pacid=23167530 polypeptide=Lus10011170 locus=Lus10011170.g ID=Lus10011170.BGIv1.0 annot-version=v1.0 ATGTCCCGGCGATTATGTCCCGGCTGTTCTTCTCACAGCTCGGCAGTTGCGTGGAGGAGCTCTTCCATAGTATCCTCCCAGCTAGGGTTTTACTTCTCCA ACAATGTGAATAGACTTTCACTTGCTCCCCAATGTCAACACTTGTCCCGCCGTGGCTTTCGCATTTCTTGTTCTACTTCTGCCACAGATCCACTCTTGGT TAAGGCTGCAAGAGGTGAATCGGTTGCGAGGCCTCCGGCATGGATGATGCGTCAGGCAGGGAGGTATATGGCCGTTTACAGAAAGCTTGCTGAGAAATAC CCATCTTTCAGAGAGAGGTCCGAGACAACCGATCTCATTGTGGAAATTTCGTTGCAGCCCTGGGAAGCCTTTCGCCCAGACGGTGTCATTATTTTCTCCG ATATACTTACACCACTACCAGCATTCGGTGTGTCCTTTGACATAGAAGACGTGCGAGGCCCAGTTATTCCGTCTCCAATTCGTTCAAATGAGGATTTGAA GACTTTGCATCCCATCGAATTAGAAAAGCTGGAATTTGTCGGGGACTCTCTTAGGTTACTTCGCAAAGAGGTTGAGGGGAAAGCAGCTGTGCTTGGTTTT GTGGGATCGCCTTGGACGATTGGTACGTACATAGTGGAAGGCGGTATGACTCGCACATATACAACCATAAAGAGCATGTGCCATACAGCACCACATGTAT TGAAGGCTCTCCTCGCTCACTTAACACAGGCGATATCTGATTATGCTGTTTTTCAAGTAGAGTCTGGTGCTCATTGTATTCAGATATTTGATTCCTGGGG TGGCCAACTGTCTCCTGCCATGTGGGAGATCTGGTCAAAGCCTTATCTCAAAGAGATAGTCAGTACAGTGAAGAGCAAATGTCCAGGAACACCCCTTGTT CTTTACATAAACGGAAACGGTGGCCTGCTTGAGCGTATGAAAGATATAGGAGTTGATGTGATTGGACTAGACTGGACAGTGGATATGGCAGATGGCAGGA AACGTTTAGGGAACGGAATCAGCGTACAAGGAAATGTCGACCCTGCTTACTTGTTCTTGCCCCTCCCTGCAATCACTGATGAAATTCACAGAGTGGTGAG TTGTGCTGGACCAAAGGGGCACATCCTTAACTTAGGACATGGTGTTCTTGTTGGGACGCCCGAAGAAGCTGTTGCACATTTCTTCGACGTTACGAAAAGC CTCGATTTCTCTACTTCTGTCCAAGGTCGCAGTATGGTTGCAGCGACGACATAA
AA sequence Show only first row Show all	>Lus10011170 pacid=23167530 polypeptide=Lus10011170 locus=Lus10011170.g ID=Lus10011170.BGIv1.0 annot-version=v1.0 MSRRLCPGCSSHSSAVAWRSSSIVSSQLGFYFSNNVNRLSLAPQCQHLSRRGFRISCSTSATDPLLVKAARGESVARPPAWMMRQAGRYMAVYRKLAEKY PSFRERSETTDLIVEISLQPWEAFRPDGVIIFSDILTPLPAFGVSFDIEDVRGPVIPSPIRSNEDLKTLHPIELEKLEFVGDSLRLLRKEVEGKAAVLGF VGSPWTIGTYIVEGGMTRTYTTIKSMCHTAPHVLKALLAHLTQAISDYAVFQVESGAHCIQIFDSWGGQLSPAMWEIWSKPYLKEIVSTVKSKCPGTPLV LYINGNGGLLERMKDIGVDVIGLDWTVDMADGRKRLGNGISVQGNVDPAYLFLPLPAITDEIHRVVSCAGPKGHILNLGHGVLVGTPEEAVAHFFDVTKS LDFSTSVQGRSMVAATT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10011170 [exp]	0	1
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10043079 [exp]	1.0	0.9712
AT3G51870			Mitochondrial substrate carrie...		Lus10035509 [exp]	2.4	0.9622
AT3G51870			Mitochondrial substrate carrie...		Lus10027789 [exp]	2.8	0.9601
AT2G43030			Ribosomal protein L3 family pr...		Lus10001337 [exp]	2.8	0.9662
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10029124 [exp]	3.5	0.9499
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10005668 [exp]	5.5	0.9572
AT3G46610			Pentatricopeptide repeat (PPR-...		Lus10014577 [exp]	5.7	0.9538
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015110 [exp]	6.5	0.9565
AT2G43030			Ribosomal protein L3 family pr...		Lus10013640 [exp]	7.1	0.9590
AT1G30680			toprim domain-containing prote...		Lus10023380 [exp]	7.7	0.9510

Compare expression of checked genes

Lus10011170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.