Plant FIBer expression Database

Lus10011171 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G20980 838 / 0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
AT5G44320 794 / 0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015435
[exp]
1074 / 0 AT4G20980 917 / 0.0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G044500
[exp]
860 / 0 AT4G20980 766 / 0.0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
Potri.011G053500
[exp]
842 / 0 AT4G20980 753 / 0.0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0236 PDDEXK PF05091 eIF-3_zeta Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
Representative CDS sequence
>Lus10011171 pacid=23147125 polypeptide=Lus10011171 locus=Lus10011171.g ID=Lus10011171.BGIv1.0 annot-version=v1.0
ATGGCTCCGAGCTTCGAATTGGGCGCCGTTCCCTTCAATCCAGAAGGCTGGGGTCCTCCGGACGCCGCCGTAGCTACCAACTCCTCCACTCTACCCCTGA
ACGTTCCGTTCGCGCCGTTCTCCCGAGCTGAGAAGCTCGGCCGAATCGCCGATTGGACTCGAAACAATCCGAACGTTGGCCGTCCCAACGCCGGAAAGAA
CGCTTCAGAATCAGTCTTCGACTTCACCGCCGACGATACCTTCCTCGGTGGAGGAGGAGGAGCTGGAGGAGGAGGAGATGAGGAGGCCTTCCGCCTCGTC
GACGGCAAGCTCCCGACCAGACCGAAGTTTGGGCCTAAGTGGAGGTTCAACCAGCACAGGCCGCAGCTCCCGCAGCGTCGCGATGAGGAAGTCGAGGCTA
AGAAGCGCGAAGCAGAGAAGGAGCGCGCGAGAAGGGACAGGCTATGGAATCTCAACCGATCGAACCAGAATCAACAACGTCGGGAGGCGGCTGCGTTCAA
ATCGTCGGTGGATATTCAGCCGGAGTGGAATATGCTGGATCAGATCCCGTTCTCGACTTTCTCCAAGCTGTCCTTTGCCGCTCCCGAGCCGGAGGATCTG
CTCATGTGCGGAGGATTGGAGTTTTACGATCGGACTTATGATCGGATCACTCCTAAGAACGAACGCCGTCTGGAGAGGTTCAAGAACCGCAACTTCTTCA
AAGTCACAACCACCGATGATCCAGTGATCAGAAGGCTGGCGAATGAGGATAAGGCTACAGTCTTTGCCACCGATACTATCTTAGCCACTCTGATGTGTGC
TCCAAGGTCAGTCTATTCATGGGATATTGTGGTTCAGCGTGTTGGTAACAAGTTATTCTTTGATAAGAGGGATGGGTCGCAGCTCGATTTGCTTTCTGTC
CATGAGACATCACAGGAGCCTTTGCCTGAGGCAAAGGACGATATCAACTCTGCTTACTCATTGAGTGTTGAAGCTGCTTACATTAACCAGAACTTCTCCC
AGCAAGTGTTGAATAGGAATGGCAATAAGGTTACATTCGATGAGCCTAACCCTTTTGCTAGCGAAGGAGAGGAAGTTGCTTCTGTCGGGTATAGGTATAG
AAGGTGGAAGCTTGATAACGATATGCATTTAGTCTCTAGATGTGAGGTGCAGGGTGTTTCTGAATCTAACAACCAGAGATCGTACTTGACTCTGAATGCA
TTGAATGAATTTGATCCCAAGTATTCTGGTGTTGACTGGAGGCAGAAGCTCGAGACTCAGAGAGGAGCTGTTCTAGCTACTGAGTTGAAAAACAATGCGA
ATAAGCTAGCTAAGTGGACCGCTCAGGCATTGCTGGGAGGTGCAGATATGATGAAGCTGGGATATGTCTCTAGGGTTCATCCTAGAGATCATTTTAACCA
TGTGATTCTTGCTGTTGTGGGATACAAGCCTAGAGAATTTGCTGCGCAGATTAATCTGAACACTTCCAACATGTGGGGTATTGTGAAGAGCATTGTGGAT
CTTTGTATGAAGCTGAACGAGGGCAAGTATGTGTTGGTGAAGGATCCTTCGAAGCCTCAGGTGAGGATTTATGAGGTTCCGGCTGATGCGTTTGAGAATG
ACTATGTTGAGGAGCCTTTGCCTGAGGATGAGCAGGTGCAGCCCCCTGCTGAAGGTGAAGAGAATGGTGATGCTAATGGTGACGCTAAGAAGGATGTTGA
AGAGAAAGAGGCCGATGCTGCTCAGGCTTGA
AA sequence
>Lus10011171 pacid=23147125 polypeptide=Lus10011171 locus=Lus10011171.g ID=Lus10011171.BGIv1.0 annot-version=v1.0
MAPSFELGAVPFNPEGWGPPDAAVATNSSTLPLNVPFAPFSRAEKLGRIADWTRNNPNVGRPNAGKNASESVFDFTADDTFLGGGGGAGGGGDEEAFRLV
DGKLPTRPKFGPKWRFNQHRPQLPQRRDEEVEAKKREAEKERARRDRLWNLNRSNQNQQRREAAAFKSSVDIQPEWNMLDQIPFSTFSKLSFAAPEPEDL
LMCGGLEFYDRTYDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDTILATLMCAPRSVYSWDIVVQRVGNKLFFDKRDGSQLDLLSV
HETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVLNRNGNKVTFDEPNPFASEGEEVASVGYRYRRWKLDNDMHLVSRCEVQGVSESNNQRSYLTLNA
LNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLGGADMMKLGYVSRVHPRDHFNHVILAVVGYKPREFAAQINLNTSNMWGIVKSIVD
LCMKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLPEDEQVQPPAEGEENGDANGDAKKDVEEKEADAAQA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G20980 Eukaryotic translation initiat... Lus10011171
[exp]
0 1
AT5G28740 Tetratricopeptide repeat (TPR)... Lus10041573
[exp]
1.7 0.9350
AT1G26460 Tetratricopeptide repeat (TPR)... Lus10004649
[exp]
2.0 0.9427
AT3G03060 P-loop containing nucleoside t... Lus10031211
[exp]
2.8 0.9386
AT4G20980 Eukaryotic translation initiat... Lus10015435
[exp]
2.8 0.9303
AT5G60960 PNM1 PPR protein localized to the n... Lus10017862
[exp]
5.5 0.9286
AT1G73240 unknown protein Lus10026211
[exp]
5.7 0.8996
AT3G04770 RPSAB 40s ribosomal protein SA B (.1... Lus10018284
[exp]
6.0 0.9190
AT1G16870 mitochondrial 28S ribosomal pr... Lus10020429
[exp]
8.0 0.9089
AT4G27585 SPFH/Band 7/PHB domain-contain... Lus10032909
[exp]
8.7 0.8953
AT5G05520 Outer membrane OMP85 family pr... Lus10007514
[exp]
8.8 0.9135

Lus10011171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.