Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20970 133 / 1e-39 bHLH bHLH162 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G10585 58 / 1e-10 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G10586 52 / 1e-08 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G25410 41 / 0.0001 bHLH bHLH126 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042128 [exp] 93 / 7e-24 AT4G20970 96 / 6e-25 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031677 [exp] 57 / 5e-10 AT5G51780 143 / 2e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027394 [exp] 57 / 5e-10 AT5G51780 149 / 9e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031676 [exp] 46 / 4e-06 AT5G51780 119 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027395 [exp] 45 / 1e-05 AT5G51780 138 / 9e-41 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G053400 [exp] 185 / 2e-59 AT4G20970 160 / 2e-49 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G044400 [exp] 184 / 2e-59 AT4G20970 150 / 3e-46 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G129800 [exp] 135 / 5e-40 AT4G20970 109 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G079100 [exp] 117 / 1e-33 AT4G20970 105 / 6e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G099500 [exp] 117 / 3e-33 AT4G20970 83 / 2e-19 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G099400 [exp] 112 / 5e-31 AT4G20970 85 / 2e-20 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G034700 [exp] 111 / 7e-31 AT4G20970 104 / 5e-28 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G074500 [exp] 109 / 2e-30 AT4G20970 117 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G099300 [exp] 94 / 2e-24 AT4G20970 65 / 4e-13 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G134400 [exp] 47 / 2e-06 AT5G51790 107 / 2e-28 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10011172 pacid=23147146 polypeptide=Lus10011172 locus=Lus10011172.g ID=Lus10011172.BGIv1.0 annot-version=v1.0 ATGGAGAAGAAACCTAATCCTGCAAGTTGCTCAAGAGATAGGAAAGCAATTGAGAGAAATCGAAGGAACCAAATGAAAGAGCTCTACTCCAACCTCTCCT CTCTTGTTCCTCCCCAAATTTCTAAGGAGCCAGTGTCGCTGCCGGATCAGCTGGACCACGCGGCCAAGTACATAAAGAAGCTGCAGACCAACTTGGAAAA ACTGAGATTGAAAAAAGAGAGATTATCAGCCACGGCGGGAAATTCCGGCGACGAGACAGCGCCGGCGATCAGAGCCGGAACCTGCAGGCCTCCGAAGATT GAGATTCGAGAAATGGGTTCTGCTCTCGAAGTGGTTCTGATAACTGGGTCGGATTCGAAATTCGTGTTCAACGACACGATCCGAGTGATTCAGGAAGAAG ATGGGGAGATTGTGAATGCTAGCTTCTCTGTCTCTAAGGATTTGGTTTTCCATACTATACATTCTAAGATCGGCGGCGGTGGTGGTGCGGCGAGGATAAG TGAAAGGTTGAAGAAAATTGTTGGGGAATATGGTGGATGA
AA sequence Show only first row Show all	>Lus10011172 pacid=23147146 polypeptide=Lus10011172 locus=Lus10011172.g ID=Lus10011172.BGIv1.0 annot-version=v1.0 MEKKPNPASCSRDRKAIERNRRNQMKELYSNLSSLVPPQISKEPVSLPDQLDHAAKYIKKLQTNLEKLRLKKERLSATAGNSGDETAPAIRAGTCRPPKI EIREMGSALEVVLITGSDSKFVFNDTIRVIQEEDGEIVNASFSVSKDLVFHTIHSKIGGGGGAARISERLKKIVGEYGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Lus10011172 [exp]	0	1
AT4G05160			AMP-dependent synthetase and l...		Lus10027377 [exp]	3.0	0.8138
AT5G48060			C2 calcium/lipid-binding plant...		Lus10015710 [exp]	3.9	0.8222
AT3G22420		ZIK3, WNK2, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Lus10004904 [exp]	11.7	0.7957
AT5G50290			unknown protein		Lus10042105 [exp]	14.0	0.8179
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10014493 [exp]	18.6	0.8028
AT1G68430			unknown protein		Lus10034103 [exp]	19.3	0.8053
AT3G15680			Ran BP2/NZF zinc finger-like s...		Lus10002896 [exp]	19.8	0.7965
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10010520 [exp]	25.0	0.7882
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10003822 [exp]	26.7	0.7833
AT1G64620	DOF	AtDof1,8	Dof-type zinc finger DNA-bindi...		Lus10033218 [exp]	30.0	0.7661

Compare expression of checked genes

Lus10011172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.