Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58950 555 / 0 Protein kinase superfamily protein (.1) AT3G46930 429 / 3e-147 Protein kinase superfamily protein (.1) AT1G62400 328 / 2e-109 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT2G24360 279 / 1e-89 Protein kinase superfamily protein (.1) AT4G31170 278 / 2e-89 Protein kinase superfamily protein (.1.2.3.4) AT5G01850 240 / 2e-75 Protein kinase superfamily protein (.1) AT4G38470 238 / 4e-72 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT2G17700 234 / 7e-71 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT5G40540 228 / 2e-70 Protein kinase superfamily protein (.1) AT3G27560 226 / 9e-70 ATN1 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015436 [exp] 884 / 0 AT5G58950 572 / 0.0 Protein kinase superfamily protein (.1) Lus10025442 [exp] 607 / 0 AT5G58950 510 / 2e-178 Protein kinase superfamily protein (.1) Lus10015314 [exp] 372 / 6e-127 AT5G58950 318 / 1e-105 Protein kinase superfamily protein (.1) Lus10020018 [exp] 323 / 4e-107 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10015541 [exp] 324 / 5e-103 AT1G62400 623 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10042122 [exp] 304 / 1e-99 AT1G62400 404 / 7e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10020374 [exp] 286 / 2e-92 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Lus10000237 [exp] 242 / 2e-77 AT1G62400 313 / 3e-107 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10002374 [exp] 241 / 6e-77 AT1G62400 312 / 7e-107 high leaf temperature 1, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G085300 [exp] 617 / 0 AT5G58950 604 / 0.0 Protein kinase superfamily protein (.1) Potri.005G082200 [exp] 606 / 0 AT5G58950 607 / 0.0 Protein kinase superfamily protein (.1) Potri.012G080000 [exp] 327 / 6e-109 AT1G62400 405 / 9e-142 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.011G022800 [exp] 327 / 9e-109 AT1G62400 613 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.004G001900 [exp] 323 / 2e-107 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.015G075200 [exp] 320 / 3e-106 AT1G62400 404 / 2e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.018G001800 [exp] 295 / 1e-95 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.006G280000 [exp] 293 / 4e-95 AT4G31170 677 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.006G279900 [exp] 286 / 2e-92 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001900 [exp] 283 / 4e-91 AT2G24360 648 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10011173 pacid=23147147 polypeptide=Lus10011173 locus=Lus10011173.g ID=Lus10011173.BGIv1.0 annot-version=v1.0 ATGGAGGAATCCACCACTTCCTGGCTACGCCGCACGAAATTCTCCCACACCGTTTGCCACCGGATCGACACCTCCAAGCTCGCCTCCTACAGATTCGACA CGGCGTCGTACGGTTTGGTTAATGATGATTCGGTTCGCCGGGTTTCATCTCAGATGAAGCAGAGATCTCTCTCCCCTGAACCGGAAACGACGGTTCCAGA TTCGTTCAAGGAGGCGAAGAAGGAGAAGAAGAGATTCTCAACTCCGAATCCCAGAGGGAAAGATTCTCCGGACGGTAGCAGCAGAGGGAAGAAATTGTTT CAGAAGCAGCAGTCGAAGAAGAGCGAAGAACGATCTGAATCGGAATCCGATCGGGAGCTGGATTCGTTGAAGGGGAGGAAGAAGGAATCTTTTGGCGGAT GGTCGAAGAAGTTCTTTGACCATGGTGGTGGCAGAGTCAACGCGGTGGAAGCAAGCGATGAATTCAGCGTTGATATGTCAAAGCTGTTCTTGGGACTTAG GTTTGCTCATGGAGCTCACAGCAGGCTATATCATGGCTTATATAACGACGAGCCTGTTGCTGTGAAGATCATAAGAGAGCCCGAAGATGATGAAACTGGC GTTTTGGGTGTTCGGTTGAAGAGCCAGTTCGATCGCGAGGTCTTGCTCCTGTCTCGATTGCGACATCCCAATGTCATTCGGTTTGTGGCCGCTTGCAAGA CGCCACCGGTATACTGCGTGATAACGGAGTACTTACCGGAAGGATCCCTGAGAGCCTACTTGCACAAGCTCGAAAACCGGTCTCTCGGAATGGAGAAGCT CATATCCTTCGCGTTGGACATTGCTCGAGGGATGGAGTACATCCACTCGAGGGGAGTGATCCACCGTGATCTCAAACCCGAGAACATCCTCCTCGACGAG GACTTCCGCCTCAAAATTGCGGATTTTGGTATAGCCTGCGAGGAAGCCTACTGCGACATGCTGATCGACGACCCCGGCACGTACCGGTGGATGGCTCCCG AGATGATAAAGAAGAAATCGTACGGCAGGAAAGTCGATGTCTACGGATTCGGGCTGATGCTGTGGGAGATGGTCTCCGGGGTGGTCCCGTACGAGGAGAT GAACCCGATCCAGGCTGCTTTTGCCGTTGTGAACAAGAATTTGAGGCCAGTGATCCCACCGGACTGTGCACCGGCCATGAAGGCCTTGATCGAGCAGTGC TGGTGTCTGCAGCCGGAGAAGCGGCCGGAGTTCTGGCAGATCGTCAAGGTGCTGGAGGAGTTCGAGCTGTCTTTTGCCCGCGACGGGAACTTGAACATGG TCCATAACCCGAGCTGCAGCGATCACAAGAAGGGACGTCTCCACTGGATTCAGAAGAGAGGAGGAGGGCCTGTGTATCCTTCTCCAAGTAACCCAACGCC TAAACCTAAGTTCATGTGA
AA sequence Show only first row Show all	>Lus10011173 pacid=23147147 polypeptide=Lus10011173 locus=Lus10011173.g ID=Lus10011173.BGIv1.0 annot-version=v1.0 MEESTTSWLRRTKFSHTVCHRIDTSKLASYRFDTASYGLVNDDSVRRVSSQMKQRSLSPEPETTVPDSFKEAKKEKKRFSTPNPRGKDSPDGSSRGKKLF QKQQSKKSEERSESESDRELDSLKGRKKESFGGWSKKFFDHGGGRVNAVEASDEFSVDMSKLFLGLRFAHGAHSRLYHGLYNDEPVAVKIIREPEDDETG VLGVRLKSQFDREVLLLSRLRHPNVIRFVAACKTPPVYCVITEYLPEGSLRAYLHKLENRSLGMEKLISFALDIARGMEYIHSRGVIHRDLKPENILLDE DFRLKIADFGIACEEAYCDMLIDDPGTYRWMAPEMIKKKSYGRKVDVYGFGLMLWEMVSGVVPYEEMNPIQAAFAVVNKNLRPVIPPDCAPAMKALIEQC WCLQPEKRPEFWQIVKVLEEFELSFARDGNLNMVHNPSCSDHKKGRLHWIQKRGGGPVYPSPSNPTPKPKFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58950			Protein kinase superfamily pro...		Lus10011173 [exp]	0	1
AT4G31130			Protein of unknown function (D...		Lus10026052 [exp]	3.9	0.9211
AT1G07710			Ankyrin repeat family protein ...		Lus10025287 [exp]	4.7	0.8863
AT1G58030		CAT2	cationic amino acid transporte...		Lus10005671 [exp]	4.9	0.8919
AT1G58030		CAT2	cationic amino acid transporte...		Lus10020320 [exp]	5.7	0.9071
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10025358 [exp]	6.3	0.8965
AT4G11570			Haloacid dehalogenase-like hyd...		Lus10002002 [exp]	7.7	0.8899
AT3G04660			F-box and associated interacti...		Lus10007277 [exp]	8.1	0.9016
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10042014 [exp]	12.5	0.8987
AT2G01410			NHL domain-containing protein ...		Lus10031240 [exp]	13.2	0.8693
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10042229 [exp]	13.7	0.8908

Compare expression of checked genes

Lus10011173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.