Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32480 268 / 3e-89 Protein of unknown function (DUF506) (.1) AT2G20670 253 / 4e-83 Protein of unknown function (DUF506) (.1) AT3G07350 129 / 3e-35 Protein of unknown function (DUF506) (.1) AT2G38820 124 / 3e-33 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT4G14620 124 / 6e-33 Protein of unknown function (DUF506) (.1) AT3G22970 120 / 6e-32 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT3G25240 110 / 3e-28 Protein of unknown function (DUF506) (.1) AT2G39650 110 / 3e-28 Protein of unknown function (DUF506) (.1) AT1G77145 99 / 4e-24 Protein of unknown function (DUF506) (.1) AT1G77160 99 / 6e-24 Protein of unknown function (DUF506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015437 [exp] 556 / 0 AT4G32480 260 / 6e-86 Protein of unknown function (DUF506) (.1) Lus10039838 [exp] 257 / 1e-84 AT4G32480 265 / 3e-88 Protein of unknown function (DUF506) (.1) Lus10033683 [exp] 242 / 1e-78 AT4G32480 264 / 9e-88 Protein of unknown function (DUF506) (.1) Lus10017723 [exp] 241 / 2e-78 AT4G32480 271 / 2e-90 Protein of unknown function (DUF506) (.1) Lus10041046 [exp] 156 / 2e-45 AT4G32480 172 / 6e-52 Protein of unknown function (DUF506) (.1) Lus10006177 [exp] 151 / 1e-43 AT4G32480 171 / 1e-51 Protein of unknown function (DUF506) (.1) Lus10014718 [exp] 121 / 1e-31 AT3G22970 327 / 3e-110 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10000956 [exp] 117 / 2e-31 AT2G39650 266 / 1e-89 Protein of unknown function (DUF506) (.1) Lus10024840 [exp] 120 / 3e-31 AT3G22970 324 / 4e-109 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G044300 [exp] 360 / 5e-125 AT4G32480 260 / 3e-86 Protein of unknown function (DUF506) (.1) Potri.011G053300 [exp] 333 / 2e-114 AT4G32480 253 / 3e-83 Protein of unknown function (DUF506) (.1) Potri.013G129900 [exp] 275 / 5e-92 AT4G32480 307 / 6e-105 Protein of unknown function (DUF506) (.1) Potri.019G099600 [exp] 271 / 3e-90 AT4G32480 290 / 4e-98 Protein of unknown function (DUF506) (.1) Potri.019G074400 [exp] 158 / 1e-46 AT4G32480 179 / 3e-55 Protein of unknown function (DUF506) (.1) Potri.013G100500 [exp] 146 / 6e-42 AT4G32480 172 / 4e-52 Protein of unknown function (DUF506) (.1) Potri.008G056100 [exp] 124 / 4e-33 AT2G39650 293 / 3e-99 Protein of unknown function (DUF506) (.1) Potri.008G159800 [exp] 123 / 4e-32 AT3G22970 350 / 3e-119 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.002G046300 [exp] 121 / 1e-31 AT3G22970 322 / 5e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.010G203700 [exp] 120 / 2e-31 AT2G39650 287 / 9e-97 Protein of unknown function (DUF506) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04720 [flax] [poplar] PDDEXK_6 PDDEXK-like family of unknown function
Representative CDS sequence Show only first row Show all	>Lus10011174 pacid=23147107 polypeptide=Lus10011174 locus=Lus10011174.g ID=Lus10011174.BGIv1.0 annot-version=v1.0 ATGCCCACCGGAAGAATCAGAGGAGTTCCGATCAGGCAGCACAGCTTCATGTACAACACCAGCCTCGAAGCCGCGGCTCAGTCGACATCCTCATCGGAGG AAGCGAGTCATATCACATCCGACGTGGAGGACCCGCTTTTCGGGTTCCTCGACCGCAGCTACGAAGAAGGGTCGTCGTCGCCGGAGATGATCACCTCCGA CGAGACGATGTGTTTGGCAGAAGAGGATGACTGTGGAAATGGGGAGGAGGAACATGACAGAAGCTTCTGGGAAAATCAACACCAACTTTTACAGGCGACG TTATGTAGGACAAGCTCTTTGGAGACGGGGATAAGGAACGTGACTAAAGAAGCGGTGAAGGAGCTTCAGATGGCCGGAGCGATTTGCGGTTGCGGCAGAA CTATGGTCGGCGGCTGCCGGAGCTGCTTGATGAGTGAGATCTCCGGCAGGTTAAGAACCGCCGGGTACAATAGCGGCATTTGTCGGACAAAGTGGAGGAG CTCTCCCGATATTCCATCAGGCGAGCACGCATTCATAGACGTGGTGGACAACTCGAGCAAGAAGAGAGGCGAGGTACGAATAATAATAGAGCTAAACTTC CGGCCGGAGTTTGAGATAGCAAAGGCCAGCGAGGAGTACAACCGGCTAGTCCGGCGGCTCCCGGAGGTATTCGTCGGGAAAGTGGACCGGCTAAAGGACG TGATCAAGATAGTCTGTCTGGCGGCGAAGAAGTGCATGAAGGAGAAGAAGATGCACATGGGTCCGTGGCGGAAGTACCGGTACATGCAGGCCAAATGGCT TGGAAGTCCGGTCGAGAGGAAATCGTCGCCGGCGATGTCAAATTCGAGGGATTTGGCTACGGGGTATTTGGGACGGTACCCTAAGGCACGGTCGTCGATG CTGACGGACGTGTTTAGCAATGTGCATTGTACCGCCGTCGGAGTGATGTAA
AA sequence Show only first row Show all	>Lus10011174 pacid=23147107 polypeptide=Lus10011174 locus=Lus10011174.g ID=Lus10011174.BGIv1.0 annot-version=v1.0 MPTGRIRGVPIRQHSFMYNTSLEAAAQSTSSSEEASHITSDVEDPLFGFLDRSYEEGSSSPEMITSDETMCLAEEDDCGNGEEEHDRSFWENQHQLLQAT LCRTSSLETGIRNVTKEAVKELQMAGAICGCGRTMVGGCRSCLMSEISGRLRTAGYNSGICRTKWRSSPDIPSGEHAFIDVVDNSSKKRGEVRIIIELNF RPEFEIAKASEEYNRLVRRLPEVFVGKVDRLKDVIKIVCLAAKKCMKEKKMHMGPWRKYRYMQAKWLGSPVERKSSPAMSNSRDLATGYLGRYPKARSSM LTDVFSNVHCTAVGVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32480			Protein of unknown function (D...		Lus10011174 [exp]	0	1
AT5G20250		RS6, DIN10	raffinose synthase 6, DARK IND...		Lus10017516 [exp]	1.4	0.9847
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10006498 [exp]	2.8	0.9834
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10016858 [exp]	3.5	0.9813
AT4G32480			Protein of unknown function (D...		Lus10015437 [exp]	3.7	0.9788
AT1G10600		AMSH2	associated molecule with the S...		Lus10030613 [exp]	4.6	0.9698
AT1G11380			PLAC8 family protein (.1)		Lus10018410 [exp]	4.6	0.9816
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10036978 [exp]	6.5	0.9794
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10000441 [exp]	6.9	0.9742
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	7.1	0.9806
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10002246 [exp]	7.9	0.9764

Compare expression of checked genes

Lus10011174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.