Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28240 721 / 0 Protein of unknown function (DUF616) (.1) AT1G53040 512 / 3e-177 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) AT2G02910 280 / 8e-88 Protein of unknown function (DUF616) (.1) AT1G34550 267 / 3e-80 EMB2756 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) AT4G09630 267 / 3e-80 Protein of unknown function (DUF616) (.1) AT4G38500 258 / 4e-79 Protein of unknown function (DUF616) (.1) AT5G42660 222 / 9e-66 Protein of unknown function (DUF616) (.1) AT5G46220 159 / 2e-42 Protein of unknown function (DUF616) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015438 [exp] 932 / 0 AT1G28240 698 / 0.0 Protein of unknown function (DUF616) (.1) Lus10001446 [exp] 802 / 0 AT1G28240 706 / 0.0 Protein of unknown function (DUF616) (.1) Lus10036741 [exp] 290 / 2e-91 AT2G02910 545 / 0.0 Protein of unknown function (DUF616) (.1) Lus10037186 [exp] 288 / 7e-89 AT2G02910 546 / 0.0 Protein of unknown function (DUF616) (.1) Lus10025082 [exp] 276 / 7e-86 AT4G38500 764 / 0.0 Protein of unknown function (DUF616) (.1) Lus10024001 [exp] 269 / 5e-83 AT4G38500 771 / 0.0 Protein of unknown function (DUF616) (.1) Lus10009419 [exp] 259 / 2e-77 AT1G34550 753 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10028702 [exp] 258 / 3e-77 AT1G34550 750 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10016294 [exp] 220 / 7e-65 AT5G42660 603 / 0.0 Protein of unknown function (DUF616) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G053000 [exp] 791 / 0 AT1G28240 775 / 0.0 Protein of unknown function (DUF616) (.1) Potri.004G044100 [exp] 780 / 0 AT1G28240 779 / 0.0 Protein of unknown function (DUF616) (.1) Potri.011G119300 [exp] 526 / 0 AT1G53040 588 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.001G399800 [exp] 517 / 4e-179 AT1G53040 574 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.010G094000 [exp] 286 / 4e-90 AT2G02910 565 / 0.0 Protein of unknown function (DUF616) (.1) Potri.009G138000 [exp] 273 / 1e-84 AT4G38500 725 / 0.0 Protein of unknown function (DUF616) (.1) Potri.004G177600 [exp] 270 / 1e-83 AT4G38500 750 / 0.0 Protein of unknown function (DUF616) (.1) Potri.013G113700 [exp] 257 / 2e-76 AT1G34550 708 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.019G084100 [exp] 257 / 2e-76 AT1G34550 707 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.002G149900 [exp] 218 / 4e-64 AT5G42660 633 / 0.0 Protein of unknown function (DUF616) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04765 [flax] [poplar] DUF616 Protein of unknown function (DUF616)
Representative CDS sequence Show only first row Show all	>Lus10011175 pacid=23147173 polypeptide=Lus10011175 locus=Lus10011175.g ID=Lus10011175.BGIv1.0 annot-version=v1.0 ATGAGTGGAAGTTCATTGGGGATCCGCTCGGGGAGTTATGGTTCATTGGAGAAACTGCAACAAAATCAACAGCAATATCAGTTCCAACATCAGTTCATTG GGGATCCGCTCGGGAATCTGTTCTTGCCTGTTCAATCGGCGATCAGGACCAAGCCGGCGAAGATGTTTAAGGAGAAGGACAGATTCTTCCATTGGATCTG CAAGTTCGCCGGCCGGAAGAAGGTCGGAATGCTGCTTCTCTGCGTCATCTCCGCTGCGGTTTTCATCTGGGTTTTGTATATAGGAAAAGGTGAAGATGCA CAGGAAGGTGATCATGTTCCAACGTTAGGCATACTAAGAAACATAACTTCTGTCAATATAAAGAATATTCCAGCTTTCATTCGTCCACCACCTCCTCCTT CGTATTATATGGGCCACGTTCTTCCTCCTGGACATCCATGCAATAGCTTCACATTGCCTCCTCCTCCTGCAGACAAGAAGAGAACTGGACCGCGGCCATG TCCTGTATGTTACCTGCCTGTGCAAGAAGCCATCAACTTGATGCCAAAGCTTCCGTCGTTCTCTTCCGTCCTTAAGAATCTGACATACATCTACGAGAAT CCGTTGACTAAAAATGGTGAATTTGGGGGCTCAGACTTTGGAGGATATCCTACCTTGGCTCAAAGAACTGACTCCTTTGATATTAGAGAGTCAATGAGTG TGCACTGCGGGTTTGTCAATGGTACAAGGGCTGGCCGGAATACAGGATTTGATATTGCAGAGGTCGATCTGGATGCGATGGACCAGTGCAGGGGTGTGGT TGTTTCCTCTGCAATATTTGCGGCTTTTGATAATATACAACAGCCAAGCAATATCAGTGAGTATTCCAAGAGAACTGTATGTTTCTTTATGTTTGTGGAT GAAGAAACAGAAACCTACCTCCAGAATAGTGGGCAGTTGAATGATAGCAGAAAGGTTGGTGTATGGAGAATCGTTAGGATCCATAACCCTCCTTACACTG ATGGGAGACGCACCGGGAAGATTCCAAAGCTGCTACCTCAGAGGTTATTTCCAAATGCTCGCTACTCTATATGGATTGATGGGAAGCTTGAGCTGGTTGT TGATCCCTATCAAATTCTTGAAAGGTTTTTGTGGAGGGCAAATGCTACATTTGCGATCTCCCGACACTACAAACGCTTTGATGTCTTCGTTGAAGCTCAG GCAAACAAAGCCGCTGGGAAGTATGATAATGCTTCCATTGACTTCCAGATTGATTTCTACAAGAATGAAGGCCTGACCCCGTTCACTCCGGACAAGTTTC CTATTACTTCTGGCATGTTCAAGACCCTCCTCATTAATCATTTTGAATATTATGTTCCTGAAGGGTGCGTTATCATCAGGGAGCATGCACCTATAAGCAA CCTCTTCACTTGTCTTTGGTTCAACGAAGTTGACCGCTTTACTTCAAGGGACCAAATCAGCTTCTCCACCGTCCGGGATAAGATCCGTGCCAAAACGAAT TGGACTGTCAACATGTTCTTGGACTGCGAGAGAAGAAACTTCGTGGTTCAGAAATACCACAGGGAAGTGCTTCTGCGAATGTCTCGCCACCCACCTCCCT CTGTTCTTCCACCTGCATTGCCAGAGAGTCAGCCACCACCACCGCCGATAATCGAACCTCCACCTCAGATCAGGAGGGGAGGAGTGAGGCGGTCCAGAAG GGCTGGAGGAGGGGCGAGACGCCACCGGAAAGTGGTCGCCGGTGGCCGGGATGCTGAACAACCCATGTGA
AA sequence Show only first row Show all	>Lus10011175 pacid=23147173 polypeptide=Lus10011175 locus=Lus10011175.g ID=Lus10011175.BGIv1.0 annot-version=v1.0 MSGSSLGIRSGSYGSLEKLQQNQQQYQFQHQFIGDPLGNLFLPVQSAIRTKPAKMFKEKDRFFHWICKFAGRKKVGMLLLCVISAAVFIWVLYIGKGEDA QEGDHVPTLGILRNITSVNIKNIPAFIRPPPPPSYYMGHVLPPGHPCNSFTLPPPPADKKRTGPRPCPVCYLPVQEAINLMPKLPSFSSVLKNLTYIYEN PLTKNGEFGGSDFGGYPTLAQRTDSFDIRESMSVHCGFVNGTRAGRNTGFDIAEVDLDAMDQCRGVVVSSAIFAAFDNIQQPSNISEYSKRTVCFFMFVD EETETYLQNSGQLNDSRKVGVWRIVRIHNPPYTDGRRTGKIPKLLPQRLFPNARYSIWIDGKLELVVDPYQILERFLWRANATFAISRHYKRFDVFVEAQ ANKAAGKYDNASIDFQIDFYKNEGLTPFTPDKFPITSGMFKTLLINHFEYYVPEGCVIIREHAPISNLFTCLWFNEVDRFTSRDQISFSTVRDKIRAKTN WTVNMFLDCERRNFVVQKYHREVLLRMSRHPPPSVLPPALPESQPPPPPIIEPPPQIRRGGVRRSRRAGGGARRHRKVVAGGRDAEQPM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28240			Protein of unknown function (D...		Lus10011175 [exp]	0	1
AT3G63340			Protein phosphatase 2C family ...		Lus10014699 [exp]	2.4	0.8998
AT5G48940			Leucine-rich repeat transmembr...		Lus10028612 [exp]	3.7	0.8921
AT1G21070			Nucleotide-sugar transporter f...		Lus10036606 [exp]	5.0	0.8690
AT3G24240			Leucine-rich repeat receptor-l...		Lus10018911 [exp]	5.2	0.8797
AT1G21070			Nucleotide-sugar transporter f...		Lus10035824 [exp]	5.7	0.8732
AT1G63300			Myosin heavy chain-related pro...		Lus10038860 [exp]	6.2	0.8360
AT5G19610		GNL2	GNOM-like 2 (.1)		Lus10034615 [exp]	7.5	0.7749
					Lus10008674 [exp]	8.8	0.8642
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10006066 [exp]	9.4	0.7536
AT3G51150			ATP binding microtubule motor ...		Lus10025969 [exp]	10.2	0.8637

Compare expression of checked genes

Lus10011175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.