Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15358 189 / 7e-63 unknown protein AT1G53035 182 / 5e-60 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015439 [exp] 281 / 1e-98 AT3G15358 190 / 3e-63 unknown protein Lus10039835 [exp] 177 / 1e-57 AT1G53035 172 / 7e-56 unknown protein Lus10018600 [exp] 175 / 5e-57 AT1G53035 166 / 1e-53 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G052900 [exp] 222 / 1e-75 AT3G15358 159 / 7e-51 unknown protein Potri.004G044000 [exp] 222 / 1e-75 AT1G53035 182 / 4e-60 unknown protein Potri.013G130100 [exp] 200 / 6e-67 AT1G53035 169 / 9e-55 unknown protein Potri.001G399900 [exp] 193 / 2e-64 AT1G53035 182 / 6e-60 unknown protein Potri.011G119200 [exp] 187 / 7e-62 AT1G53035 172 / 4e-56 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011176 pacid=23147118 polypeptide=Lus10011176 locus=Lus10011176.g ID=Lus10011176.BGIv1.0 annot-version=v1.0 ATGCCGCCGTCGCAGTCTCAGTCGCAGTCGCTGGCGTCTTCAGCGGCGTTCAGGCTGATCTGCGTGCTCCACTCGCTAATCGCGATCACGAGCGGGACGT TGATGATGTTCAGCGTGAAGGAAGTCTACGCTCTAACACACGGGATCGACACGGCGGCGAAGCTGCTAGGATCGACGCCGGAGGACCAGATCTTGATCCG GACATCGGATTCGTTCGCCGGGCTGCTCCTGTTCGCGATCGGGAGCTTGCTGTTCATGGTTTCGTTCGTGAAAGATCGGGAGTTCCACTCGTTCTTCGCC AAGGGGTGTACGTTGCTCCACTTGTTCATGGCGGTTTGGAGGGTTTACTTCGAGACTAGAGTTGAGGCACTGGCCTGGGATTGCGTGAGGCAGACAGTTG GCGACTTCTTATTGGCTACTTCCTGGGTTTTTTTCCTCGTCTATTCGTGGAGAGAAAAGTATGATTAA
AA sequence Show only first row Show all	>Lus10011176 pacid=23147118 polypeptide=Lus10011176 locus=Lus10011176.g ID=Lus10011176.BGIv1.0 annot-version=v1.0 MPPSQSQSQSLASSAAFRLICVLHSLIAITSGTLMMFSVKEVYALTHGIDTAAKLLGSTPEDQILIRTSDSFAGLLLFAIGSLLFMVSFVKDREFHSFFA KGCTLLHLFMAVWRVYFETRVEALAWDCVRQTVGDFLLATSWVFFLVYSWREKYD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15358			unknown protein		Lus10011176 [exp]	0	1
AT3G15358			unknown protein		Lus10015439 [exp]	1.4	0.8895
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10040557 [exp]	4.4	0.9028
					Lus10024788 [exp]	4.9	0.8877
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Lus10021511 [exp]	5.5	0.8828
AT5G54540			Uncharacterised conserved prot...		Lus10003594 [exp]	7.7	0.8637
AT5G52190			Sugar isomerase (SIS) family p...		Lus10014993 [exp]	9.0	0.8642
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10042623 [exp]	10.5	0.8892
AT5G67190	AP2_ERF	DEAR2	DREB and EAR motif protein 2 (...		Lus10018727 [exp]	11.0	0.8416
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10028265 [exp]	11.0	0.8196
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Lus10023493 [exp]	12.6	0.8864

Compare expression of checked genes

Lus10011176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.