Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30930 217 / 9e-70 WRKY32, NFD1 NUCLEAR FUSION DEFECTIVE 1, Ribosomal protein L21 (.1) AT1G35680 88 / 2e-20 RPL21C chloroplast ribosomal protein L21, Ribosomal protein L21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015441 [exp] 340 / 9e-118 AT4G30930 217 / 7e-70 NUCLEAR FUSION DEFECTIVE 1, Ribosomal protein L21 (.1) Lus10014819 [exp] 100 / 5e-25 AT1G35680 220 / 1e-72 chloroplast ribosomal protein L21, Ribosomal protein L21 (.1) Lus10017912 [exp] 98 / 3e-24 AT1G35680 213 / 4e-70 chloroplast ribosomal protein L21, Ribosomal protein L21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G095700 [exp] 203 / 2e-64 AT4G30930 181 / 6e-56 NUCLEAR FUSION DEFECTIVE 1, Ribosomal protein L21 (.1) Potri.019G083400 [exp] 105 / 5e-27 AT1G35680 173 / 3e-54 chloroplast ribosomal protein L21, Ribosomal protein L21 (.1) Potri.013G112900 [exp] 93 / 2e-22 AT1G35680 157 / 6e-48 chloroplast ribosomal protein L21, Ribosomal protein L21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00829 [flax] [poplar] Ribosomal_L21p Ribosomal prokaryotic L21 protein
Representative CDS sequence Show only first row Show all	>Lus10011178 pacid=23147132 polypeptide=Lus10011178 locus=Lus10011178.g ID=Lus10011178.BGIv1.0 annot-version=v1.0 ATGGCGCAGCGACGTTCACTGCAATCGCTTGCTCGTCTCATCTCTTCATCACCATCCACCTTCTCCGCTCACCACGCACTGATACCTCTCAACTCGCTCC TTCCAGCTTCCGCAATCAGCAGCTCGAGCTACAATTCCATTCTCCCCAACTCCGACGCCATTTCCTCCTGGTGCGGCAGCGGCAGTCTCTTCTCTAGCAA CCGAGCTCGGCATCTGTCTTCTGGGTCACGAGACGACAACGACGAAGATGATGATGACGATGATGATGAAGGCGATGAGGATGACGAGACGGATTACAGC GATGAGGACGATGATGAGAGAGCGGAGGGAGCTGGGGAGTTGTCTGATTCTAATTCGAAGACGAATCATTCAGGTCCGATTGATAAGGTAGCTAGAGCTG CCGAGATAGGATACGAAGTGATTGGTTCTCTAAAGCGTTCTGATGAAGTGTTCAAGCCATACGAGCCTGTTTATGCCGTTGTTCAGATTGGTTCGCATCA GTTCAAGGTGAGCAATGGGGATTCCATTTTCACAGAGAAATTGAAGTACTGTGATATAAATGACAAGTTGATTCTGAACAAAGTTCTGTTACTAGGGTCA CCGACCGAAACAATCGTTGGCAGACCTATTGTGCCGGATTCAGCCGTCCATGCAGTTGTCGAGGAACATGCATTGGATGCAAAGGTGATCATCTTCAAGA AAAAGCGAAGGAAGAACTATCGGCGAACCAAAGGACATCGCCAGGAACTGACCAAGCTGAGGATCACTGACATACAAGGAATCGCGAAACCCGTAATCGT TGAAGAACCAAAACCTACGAAGGCAAAGTCGACGAAAACAGTTGAGCAGCAAGAAAAGGTTGCTGTTGCTGCTTAG
AA sequence Show only first row Show all	>Lus10011178 pacid=23147132 polypeptide=Lus10011178 locus=Lus10011178.g ID=Lus10011178.BGIv1.0 annot-version=v1.0 MAQRRSLQSLARLISSSPSTFSAHHALIPLNSLLPASAISSSSYNSILPNSDAISSWCGSGSLFSSNRARHLSSGSRDDNDEDDDDDDDEGDEDDETDYS DEDDDERAEGAGELSDSNSKTNHSGPIDKVARAAEIGYEVIGSLKRSDEVFKPYEPVYAVVQIGSHQFKVSNGDSIFTEKLKYCDINDKLILNKVLLLGS PTETIVGRPIVPDSAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRITDIQGIAKPVIVEEPKPTKAKSTKTVEQQEKVAVAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Lus10011178 [exp]	0	1
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Lus10015441 [exp]	1.4	0.9112
AT5G14520			pescadillo-related (.1)		Lus10002201 [exp]	3.5	0.8944
AT4G32520		AtSHMT3, SHM3	serine hydroxymethyltransferas...		Lus10005916 [exp]	5.3	0.8986
AT2G18330			AAA-type ATPase family protein...		Lus10041751 [exp]	9.9	0.8762
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Lus10026158 [exp]	11.1	0.8897
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10003667 [exp]	11.7	0.8488
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10032268 [exp]	12.6	0.8841
AT2G18330			AAA-type ATPase family protein...		Lus10028305 [exp]	15.0	0.8703
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10028574 [exp]	15.7	0.8794
AT3G18610		ATNUC-L2, PARLL...	PARALLEL1-LIKE 1, nucleolin li...		Lus10017403 [exp]	18.5	0.8725

Compare expression of checked genes

Lus10011178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.