Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03700 61 / 4e-12 Uncharacterised protein family (UPF0497) (.1) AT4G03540 60 / 1e-11 Uncharacterised protein family (UPF0497) (.1) AT4G25040 46 / 2e-06 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015443 [exp] 92 / 8e-24 AT1G03700 127 / 2e-37 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G052100 [exp] 92 / 6e-24 AT4G03540 100 / 2e-27 Uncharacterised protein family (UPF0497) (.1) Potri.004G043300 [exp] 91 / 1e-23 AT4G03540 103 / 2e-28 Uncharacterised protein family (UPF0497) (.1) Potri.013G131700 [exp] 56 / 1e-09 AT1G03700 159 / 9e-50 Uncharacterised protein family (UPF0497) (.1) Potri.019G100300 [exp] 50 / 6e-08 AT1G03700 150 / 6e-47 Uncharacterised protein family (UPF0497) (.1) Potri.015G103600 [exp] 39 / 0.0006 AT4G25040 90 / 9e-23 Uncharacterised protein family (UPF0497) (.1) Potri.017G088100 [exp] 39 / 0.0007 AT4G03540 96 / 1e-25 Uncharacterised protein family (UPF0497) (.1) Potri.012G104300 [exp] 39 / 0.0008 AT4G25040 97 / 7e-26 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10011179 pacid=23147093 polypeptide=Lus10011179 locus=Lus10011179.g ID=Lus10011179.BGIv1.0 annot-version=v1.0 ATGGCGAAGGTCAGGAAGGTGGTGACGGCGGTGATGAGGGTGGTGGCGCTGGCGGCGGCGGTGGTTGCGGTGGTGGTAATGGTGACGGCCAAGGAGACTA CCCATGTGTTGAATTTGACTTTCACCGCTAAGTACAGTAACACCCCTGCGTTCATATACTACGTCGTCGCAGAAGCAATCGCCGCAGCCTACACTCTCAT AGCACTCTTCCTCTCATCCAAAAGCCTACTCTGGCGCTTAGTTGTGATCCTCGACGTGGCGGTGGCGCTGTTGCTGACGTCGAGCATCTCCGCCGCACTG GCGATAGCAATGGTGGGGAAACATGGCAATACACACGCCGGATGGCTGCCGATCTGCGGTCAGGTCCCTCATTTCTGCGACAAACAGACGGTTTCCCTCG TCGCTGGATTCGTAGCTGCCCTCGCTCAGGCTCTGCTTCTCGTCTACTCGCTGAGAGCTGCGCTCAGCCCTGTTTTCGCCCTTAAACCTTAG
AA sequence Show only first row Show all	>Lus10011179 pacid=23147093 polypeptide=Lus10011179 locus=Lus10011179.g ID=Lus10011179.BGIv1.0 annot-version=v1.0 MAKVRKVVTAVMRVVALAAAVVAVVVMVTAKETTHVLNLTFTAKYSNTPAFIYYVVAEAIAAAYTLIALFLSSKSLLWRLVVILDVAVALLLTSSISAAL AIAMVGKHGNTHAGWLPICGQVPHFCDKQTVSLVAGFVAALAQALLLVYSLRAALSPVFALKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03700			Uncharacterised protein family...		Lus10011179 [exp]	0	1
AT1G64000	WRKY	ATWRKY56, WRKY5...	WRKY DNA-binding protein 56 (....		Lus10007906 [exp]	1.4	0.9718
AT1G03700			Uncharacterised protein family...		Lus10015443 [exp]	1.7	0.9694
AT5G07475			Cupredoxin superfamily protein...		Lus10012085 [exp]	4.5	0.9706
					Lus10034812 [exp]	5.7	0.9616
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10028860 [exp]	6.0	0.9474
AT4G24130			Protein of unknown function, D...		Lus10017330 [exp]	8.4	0.9580
AT4G02830			unknown protein		Lus10042573 [exp]	8.5	0.9534
					Lus10003161 [exp]	8.8	0.9457
AT1G24405			unknown protein		Lus10036923 [exp]	8.8	0.9505
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10008500 [exp]	9.2	0.9362

Compare expression of checked genes

Lus10011179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.