Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21710 2251 / 0 NRPB2, EMB1989 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) AT5G45140 679 / 0 NRPC2 nuclear RNA polymerase C2 (.1) AT3G23780 618 / 0 NRPE2, DMS2, DRD2, NRPD2a DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) AT3G18090 587 / 0 NRPD2B nuclear RNA polymerase D2B (.1) AT1G29940 296 / 4e-83 NRPA2 nuclear RNA polymerase A2 (.1) ATCG00190 142 / 6e-34 ATCG00190.1, RPOB RNA polymerase subunit beta (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015446 [exp] 2394 / 0 AT4G21710 2298 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Lus10028778 [exp] 659 / 0 AT5G45140 1711 / 0.0 nuclear RNA polymerase C2 (.1) Lus10017504 [exp] 548 / 8e-176 AT5G45140 1652 / 0.0 nuclear RNA polymerase C2 (.1) Lus10027166 [exp] 371 / 1e-109 AT3G23780 1435 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Lus10039677 [exp] 331 / 3e-95 AT3G23780 696 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Lus10026157 [exp] 306 / 3e-86 AT1G29940 1574 / 0.0 nuclear RNA polymerase A2 (.1) Lus10011322 [exp] 233 / 7e-66 AT5G45140 468 / 2e-153 nuclear RNA polymerase C2 (.1) Lus10039408 [exp] 84 / 3e-17 AT5G45140 129 / 9e-34 nuclear RNA polymerase C2 (.1) Lus10012207 [exp] 76 / 4e-16 AT5G45140 150 / 6e-44 nuclear RNA polymerase C2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G043200 [exp] 2281 / 0 AT4G21710 2271 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Potri.015G003000 [exp] 691 / 0 AT5G45140 1826 / 0.0 nuclear RNA polymerase C2 (.1) Potri.018G019100 [exp] 612 / 0 AT3G23780 1694 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Potri.001G030750 [exp] 321 / 1e-91 AT1G29940 1674 / 0.0 nuclear RNA polymerase A2 (.1) Potri.006G263900 [exp] 135 / 4e-35 AT3G23780 253 / 5e-77 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Potri.013G142232 [exp] 140 / 2e-33 ATCG00190 2015 / 0.0 RNA polymerase subunit beta (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04567 [flax] [poplar] RNA_pol_Rpb2_5 RNA polymerase Rpb2, domain 5 PF04566 [flax] [poplar] RNA_pol_Rpb2_4 RNA polymerase Rpb2, domain 4 PF04561 [flax] [poplar] RNA_pol_Rpb2_2 RNA polymerase Rpb2, domain 2 PF04565 [flax] [poplar] RNA_pol_Rpb2_3 RNA polymerase Rpb2, domain 3 PF04563 [flax] [poplar] RNA_pol_Rpb2_1 RNA polymerase beta subunit PF04560 [flax] [poplar] RNA_pol_Rpb2_7 RNA polymerase Rpb2, domain 7
Representative CDS sequence Show only first row Show all	>Lus10011182 pacid=23147162 polypeptide=Lus10011182 locus=Lus10011182.g ID=Lus10011182.BGIv1.0 annot-version=v1.0 ATGATGATGGACGAGGATCAGGTGTACGATACGGAGATGATGGAGGATGTGGAAGGAGATGAGGAAATCACTCAGGAGGACGCGTGGGCGGTAATCTCAG CTTACTTCGAAGAGAAAGGTCTTGTGCGACAGCAGCTTGATTCGTTCGACGAGTTCATCCAGAACACAATGCAGGAGATTGTGGACGAGTCGGCTGACAT CGAGATTCGGCCGGAGAGCCAGCATAACCCCGGGCATCAGTCCGATTCCCTTGAGACCATTTACAAAATCAGCTTCGGTCAAATATATTTGAGTAAGCCT ATGATGACAGAGTCTGATGGAGAGACAGCAACACTGTTCCCTAAAGCCGCCAGGTTGAGGAACTTGACATATTCAGCTCCATTGTATGTGGACGTCTCAA AAAGGGTGATAAAGAAGGGCCATGATGGTGAAGAAGTAACTGAATCTCAAGATTTCACCAAAGTTTTTATTGGCAAGGTGCCAATCATGCTCCGGTCAAG TTATTGCACTTTGTACCAGAATTCCGAGACAGATTTGACAGAGCTTGGAGAGTGTCCCTTTGATCAAGGTGGGTATTTCATCATCAATGGGAGTGAAAAG GTGCTCATTGCACAGGAGAAGATGAGCACAAATCATGTCTATGTTTTCAAGAAACGACAGCCGAACAAGTATTCCCATGTGGCTGAAGTGCGATCCATGG CAGAGTCTCAGAACAGGCCTCCAAGTACCATGTTCGTTCGGATGCTTTCTCGTGCTGGTGCTAAAGGGGGCTCAACAGGACAATACATTAAGGCTACTCT ACCATACATCAGGACTGAAATTCCTATCATTATTGTGTTTCGAGCTCTTGGGTTTGTTGCTGACAAAGATATATTAGAGCACATTTGTTATGATTTCGCT GATACTCAAATGATGGAACTGTTACGTCCCTCGTTGGAAGAGGCATTCGTGATTCAAAATCAACAGGTTGCTCTCGACTATATCGGGAAACGTGGGGCAA CTGTTGGTGTTACGAGGGAAAAAAGGATCAAGTATGCTAGAGATATTCTGCAAAAGGAAATGCTCCCTCATGTTGGCGTTGGAGAATTTTGCGAGACCAA AAAAGCTTACTATTTTGGGTATATCATTCACCGGCTTCTACTTTGTGCACTTGGACGAAGGCCCGAGGATGATAGGGATCATTATGGAAACAAGAGGCTC GATCTTGCTGGTCCTTTGCTCGGTGGCCTTTTCAGAATGTTATTCAGAAAGTTGACTAGGGATGTCAGGTCATATGTGCAGAAGTGTGTTGATAATGGTA AAGATGTTAATCTGCAATTTGCTATCAAAGCAAAAACCATAACCAGTGGTCTTAAATACTCCCTTGCGACTGGAAATTGGGGGCAAGCAAATGCGGCTGG CACTAGAGCTGGAGTGTCCCAAGTGTTAAATAGGTTGACCTTTGCCTCTACCCTATCACATCTCCGGCGGCTGAACTCCCCAATTGGGCGTGAAGGAAAA TTGGCAAAACCAAGGCAGCTTCATAATTCCCAGTGGGGAATGATGTGTCCAGCCGAGACACCTGAAGGACAGGCCTGCGGACTAGTGAAGAATCTTGCTT TGATGGTATACATTACTGTCGGATCGGCAGCCTACCCCATATTGGAGTTTTTAGAAGAGTGGGGGACTGAAAACTTCGAGGAAATTTCTCCCGCAGTAAT ACCTCAAGCCACCAAGATTTTCGTTAATGGTTGCTGGGTTGGTATCCATCGAGACCCTGACATGTTGGTAAAGACATTGCGCCGGCTGCGGCGGAGGGTT GATGTTAACACTGAAGTCGGAGTTGTGAGAGACATTCATTTAAAGGAGCTGCGTATATACACAGATTATGGCCGTTGCAGTCGTCCTTTATTTATTGTTG AGAGCCAAAGACTTCTTATAAGAAAGAAGGACATCACCGCATTGCAGCAGAGGGAATCAACTGAAGAAGGAGGCTGGCACGATCTGGTGGCCAAAGGGTT TATCGAGTATATCGATACCGAGGAAGAGGAGACAACTATGATATCAATGACCATACATGATCTTGTACAAGCCAGAACTTACCCGGAGGAGGCTTATTCG GGCACTTACACTCACTGTGAGATTCATCCCTCGTTGATTCTTGGTGTTTGTGCCTCGATCATTCCGTTTCCTGATCATAACCAGTCTCCACGTAACACTT ACCAATCTGCTATGGGGAAGCAAGCCATGGGAATTTACGTCACTAACTATCAATTCCGTATGGACACATTGGCGTATGTTCTGTACTACCCGCAAAAACC ACTCGTTACGACAAGAGCTATGGAGCATCTCCACTTCCGGCAGCTTCCAGCTGGCATCAATGCCATTGTGGCCATCTCTTGCTATTCTGGTTACAATCAA GAAGATTCTGTCATCATGAATCAATCCTCGATTGATCGTGGATTCTTCAGATCGCTTTTCTTCCGATCTTACAGGGACGAGGAGAAAAAGATGGGCACGC TCGTTAAAGAAGATTTCGGCCGTCCAGACAGAGCTAACACCATGGGAATGCGACATGGCTCGTATGAGAAATTGGACGATGATGGTCTTGCTCCGCCTGG TACGAGATGTGCTGGTGAGGATGTTATCATCGGAAAGACCACCCCAATCTCGCAGGAAGACGCCCAGGGTCAAAATGCACGATACACGAGGCGTGACCAC AGTATAAGCTTACGTCACAGTGAAACCGGGATGGTTGATCAAGTTTTGCTGACGACGAATGCTGATGGGTTGAGGTTTGTCAAAGTGAGGGTAAGATCCG TTCGGATTCCTCAGATCGGAGACAAGTTCAGTAGTAGACACGGTCAGAAGGGAACCGTTGGTATGACTTATACTCAAGAGGACATGCCTTGGACTATTGA AGGCGTAACGCCTGATATCATCGTGAATCCGCATGCTATTCCCTCTCGTATGACGATCGGTCAGCTCATTGAGTGTATCATGGGGAAAGTTGCTGCTCAC ATGGGCAAGGAAGGCGACGCTACTCCGTTCACAGATGTTACTGTGGACAATATAAGCAAAGCCTTGCACAAGTGCGGGTACCAAATGCGTGGTTTCGAGA CCATGTACAACGGCCATACAGGCCGACGCCTCACAGCCATGATCTTCCTCGGCCCTACTTACTACCAGAGGTTGAAGCATATGGTCGACGACAAGATCCA CTCTCGAGGAAGGGGACCTGTTCAGATCCTCACAAGGCAGCCGGCTGAAGGACGGTCCCGAGACGGCGGTCTCCGTTTCGGCGAGATGGAGCGTGACTGC ATGATTGCCCACGGCGCCGCCAACTTCCTCAAGGAGAGGCTGTTCGACCAGAGCGACGCCTACAGAGTTCACGTCTGCGAGCCTTGCGGGCTGATCGCCA TTGCGAATCTGAAGAAGAGTTCGTTCGAGTGCCGGGGCTGCAAGAACAAGACCGAGATTGTCCAGGTTCGTAATCGTATAAATAACCTTTCTCGGTTAGA TATCTCGACGATTTTTGCCACTAATCCATTCGTCTCGCAGGTTCAAATACCTTACGCGTGCAAGCTCCTCTTCCAAGAGCTTATGTCCATGGCCATAGCT CCGAGAATGCTCACGAAGGATATACTTGTAAATCAGAAGTTGAAAGGGCAAAAGAGGAAATGA
AA sequence Show only first row Show all	>Lus10011182 pacid=23147162 polypeptide=Lus10011182 locus=Lus10011182.g ID=Lus10011182.BGIv1.0 annot-version=v1.0 MMMDEDQVYDTEMMEDVEGDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDSLETIYKISFGQIYLSKP MMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTESQDFTKVFIGKVPIMLRSSYCTLYQNSETDLTELGECPFDQGGYFIINGSEK VLIAQEKMSTNHVYVFKKRQPNKYSHVAEVRSMAESQNRPPSTMFVRMLSRAGAKGGSTGQYIKATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFA DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYARDILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRL DLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGK LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRV DVNTEVGVVRDIHLKELRIYTDYGRCSRPLFIVESQRLLIRKKDITALQQRESTEEGGWHDLVAKGFIEYIDTEEEETTMISMTIHDLVQARTYPEEAYS GTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQ EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYEKLDDDGLAPPGTRCAGEDVIIGKTTPISQEDAQGQNARYTRRDH SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAH MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC MIAHGAANFLKERLFDQSDAYRVHVCEPCGLIAIANLKKSSFECRGCKNKTEIVQVRNRINNLSRLDISTIFATNPFVSQVQIPYACKLLFQELMSMAIA PRMLTKDILVNQKLKGQKRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10011182 [exp]	0	1
AT5G42950			GYF domain-containing protein ...		Lus10012078 [exp]	1.0	0.9587
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10015446 [exp]	2.0	0.9513
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025704 [exp]	3.5	0.9332
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Lus10023129 [exp]	3.9	0.9467
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10021265 [exp]	4.5	0.9368
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10008726 [exp]	7.1	0.9147
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Lus10041301 [exp]	7.3	0.9070
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10019778 [exp]	8.2	0.9385
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10003024 [exp]	8.5	0.9228
AT4G24680		MOS1	modifier of snc1 (.1)		Lus10042094 [exp]	9.2	0.9091

Compare expression of checked genes

Lus10011182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.