Plant FIBer expression Database

Lus10011183 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G33793 199 / 2e-64 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018490
[exp]
337 / 1e-118 AT2G33793 237 / 1e-79 unknown protein
Lus10008547
[exp]
41 / 0.0004 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G051900
[exp]
243 / 1e-81 AT2G33793 264 / 2e-90 unknown protein
Potri.004G042800
[exp]
223 / 7e-74 AT2G33793 254 / 1e-86 unknown protein
PFAM info
Representative CDS sequence
>Lus10011183 pacid=23147156 polypeptide=Lus10011183 locus=Lus10011183.g ID=Lus10011183.BGIv1.0 annot-version=v1.0
ATGTCAGGCAGGAAAGCAAGCTCGAGGAAGCGCGCGGCAGATGCCGCCACCGTCACGAAGTCGGCTCCGCCGTCGTCCAAGCTTCGCCTCGAAGAGGATT
TCGATCCTGATATGTCAAGTGATCTCAAGGGGATCATGTCGGCGCTGCACCAGATTAGAGCGAAGACAGAGAAAGACGGTCAGAAGATGAAGGAGGAGAC
CGTCTCCAGTGTTGCTTCGGAGATTAGGTGTATGCTGAATGAAGTGAGGACGAAGGTTGAGAAGGATAGGCAAACCTTTGGTAAGGCGCTCCAGAAGAAC
TCAAAAGAGTGTGAGAATTACCTTAAGAGCGAATCTGCAAAGATTCAGGAGATGTACGAGAGGTTTTCTAAGGAGAAAGCAGCTCATATGCAGTCCATGC
AAGTGTCTCTAACGGCGATGACATTTTCCAACCCTGTTCTTTTCTGGTTGGCAGAAACCATAACCAAATTCGAGGATGACAAGGAGAGACTGCTGATGCG
ATATGAACAACTGAAGAAGAAAGAGAAGAACATGGTTGCTGAGTGTGAGAAAGCTTGCGAGGAAAAAATCTCTAAACTGGAGGAATCCCTCAAGAAGAAA
AAACAGGACGGCAAGACCTTCAGCATACTGAGGAAAACGCTAGGCAGTTTCCTGGACAACGTCTCCGACGACGAATTCCCAGCAGACGATTGA
AA sequence
>Lus10011183 pacid=23147156 polypeptide=Lus10011183 locus=Lus10011183.g ID=Lus10011183.BGIv1.0 annot-version=v1.0
MSGRKASSRKRAADAATVTKSAPPSSKLRLEEDFDPDMSSDLKGIMSALHQIRAKTEKDGQKMKEETVSSVASEIRCMLNEVRTKVEKDRQTFGKALQKN
SKECENYLKSESAKIQEMYERFSKEKAAHMQSMQVSLTAMTFSNPVLFWLAETITKFEDDKERLLMRYEQLKKKEKNMVAECEKACEEKISKLEESLKKK
KQDGKTFSILRKTLGSFLDNVSDDEFPADD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G33793 unknown protein Lus10011183
[exp]
0 1
AT1G04920 ATSPS3F sucrose phosphate synthase 3F ... Lus10016657
[exp]
3.9 0.9535
AT2G33770 ATUBC24, UBC24,... UBIQUITIN-CONJUGATING ENZYME 2... Lus10005854
[exp]
4.6 0.9449
AT3G47570 Leucine-rich repeat protein ki... Lus10033330
[exp]
11.7 0.9442
Lus10017917
[exp]
12.3 0.9484
AT5G41810 unknown protein Lus10003901
[exp]
19.0 0.9472
AT3G16990 Haem oxygenase-like, multi-hel... Lus10037751
[exp]
21.0 0.9470
AT3G47570 Leucine-rich repeat protein ki... Lus10033329
[exp]
24.4 0.9333
AT1G10070 ATBCAT-2 branched-chain amino acid tran... Lus10028247
[exp]
25.9 0.9464
AT1G13450 Trihelix GT-1 GT-1, Homeodomain-like superfa... Lus10036978
[exp]
26.4 0.9470
AT3G20250 APUM5 pumilio 5 (.1) Lus10034808
[exp]
26.7 0.9440

Lus10011183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.