Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03510 129 / 2e-36 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT4G27470 119 / 7e-33 ATRMA3 RING membrane-anchor 3 (.1) AT4G28270 103 / 3e-27 ATRMA2 RING membrane-anchor 2 (.1) AT1G19310 102 / 2e-26 RING/U-box superfamily protein (.1) AT1G74990 100 / 2e-26 RING/U-box superfamily protein (.1) AT3G58030 102 / 7e-25 RING/U-box superfamily protein (.1.2.3.4) AT2G23780 98 / 1e-24 RING/U-box superfamily protein (.1) AT2G42030 99 / 8e-24 RING/U-box superfamily protein (.1) AT2G44410 76 / 1e-15 RING/U-box superfamily protein (.1) AT2G26350 54 / 2e-08 PEX10, ATPEX10 peroxin 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018489 [exp] 372 / 1e-131 AT4G03510 159 / 7e-48 RING membrane-anchor 1 (.1.2) Lus10010791 [exp] 105 / 3e-27 AT1G19310 266 / 1e-90 RING/U-box superfamily protein (.1) Lus10016303 [exp] 104 / 6e-27 AT1G19310 268 / 2e-91 RING/U-box superfamily protein (.1) Lus10033697 [exp] 99 / 3e-25 AT4G03510 149 / 1e-44 RING membrane-anchor 1 (.1.2) Lus10004162 [exp] 102 / 4e-25 AT3G58030 367 / 3e-124 RING/U-box superfamily protein (.1.2.3.4) Lus10021063 [exp] 102 / 5e-25 AT3G58030 362 / 1e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10018589 [exp] 99 / 6e-25 AT4G03510 154 / 9e-47 RING membrane-anchor 1 (.1.2) Lus10016255 [exp] 100 / 2e-24 AT3G58030 362 / 2e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10029292 [exp] 100 / 2e-24 AT3G58030 374 / 6e-127 RING/U-box superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G051800 [exp] 198 / 1e-63 AT4G27470 163 / 8e-50 RING membrane-anchor 3 (.1) Potri.004G042700 [exp] 194 / 3e-62 AT4G03510 157 / 1e-47 RING membrane-anchor 1 (.1.2) Potri.013G132300 [exp] 145 / 1e-42 AT4G03510 191 / 2e-60 RING membrane-anchor 1 (.1.2) Potri.019G100800 [exp] 144 / 6e-42 AT4G03510 187 / 1e-58 RING membrane-anchor 1 (.1.2) Potri.001G401600 [exp] 141 / 3e-41 AT4G27470 205 / 5e-66 RING membrane-anchor 3 (.1) Potri.011G120800 [exp] 133 / 6e-38 AT4G27470 167 / 7e-51 RING membrane-anchor 3 (.1) Potri.007G031600 [exp] 105 / 2e-27 AT2G23780 227 / 4e-75 RING/U-box superfamily protein (.1) Potri.002G133000 [exp] 103 / 6e-27 AT1G19310 244 / 5e-82 RING/U-box superfamily protein (.1) Potri.014G040400 [exp] 103 / 1e-26 AT1G19310 226 / 4e-75 RING/U-box superfamily protein (.1) Potri.005G127900 [exp] 99 / 3e-25 AT2G23780 234 / 3e-78 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10011184 pacid=23147160 polypeptide=Lus10011184 locus=Lus10011184.g ID=Lus10011184.BGIv1.0 annot-version=v1.0 ATGGCTTTCGAGCAATACTATGCGCAGGAATGGAAATCAGTTGCAAGTGCAGCAGCAGCAACAGCACCACAAACAACTCTCACCGACTGCTTCGACTGCA ATATATGTTTTGACTTTGCTCGAGAACCAGTAGTCACACTCTGTGGCCATCTATACTGCTGGCCCTGCATCTACAAATGGCTCCATGTCCAAACCGAGCA CCCTCAATGCCCTGTTTGCAAAGCTGACATATCTCACACCACCATGGTCCCTCTCTACGGCAGAGGAGGACAATCCTCCGAAGAAGAAGAACCAAAGCTT GAAACCAAGCCCTCAACCGGCATCAATGGCATTCCCATCCCTCCTAGACCACCTGCCTATGGCTGCACCCAAGCTCTCACATCTGTCAGCACACCCCAGC TTCCATACCACAACCACCACCACCACCATAGTCCAATGGCATTCGACAATGGACCTTCTTCTTCTTCATTGTCGTCCTCACCATTGGCGAACCTTAGAGG AGTAGGCTCTCCATCGACCGGGTTCCACCACCCTGCGTTCGGGGTGTTTGGCGAGTTCGTCTACGCAAGGGTGTTTGGGAACTCAGATAGTCTGTACACG TACCCTAACTCATACCAGTTTGTGACGAGTAGTACTTCGAGGTTGAGGAGGCACGAGATGCAAGCGGAGAAGTCGTTGAATAGAATCTCCATCTTCCTCT TTTGTTGCTTCCTCTTGTGCCTGATCGTGTTCTGA
AA sequence Show only first row Show all	>Lus10011184 pacid=23147160 polypeptide=Lus10011184 locus=Lus10011184.g ID=Lus10011184.BGIv1.0 annot-version=v1.0 MAFEQYYAQEWKSVASAAAATAPQTTLTDCFDCNICFDFAREPVVTLCGHLYCWPCIYKWLHVQTEHPQCPVCKADISHTTMVPLYGRGGQSSEEEEPKL ETKPSTGINGIPIPPRPPAYGCTQALTSVSTPQLPYHNHHHHHSPMAFDNGPSSSSLSSSPLANLRGVGSPSTGFHHPAFGVFGEFVYARVFGNSDSLYT YPNSYQFVTSSTSRLRRHEMQAEKSLNRISIFLFCCFLLCLIVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10011184 [exp]	0	1
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10022015 [exp]	4.2	0.8747
AT5G57260		CYP71B10	"cytochrome P450, family 71, s...		Lus10030189 [exp]	13.8	0.8747
AT1G67340			HCP-like superfamily protein w...		Lus10015784 [exp]	15.6	0.8548
AT3G06490	MYB	BOS1, AtMYB108	BOTRYTIS-SUSCEPTIBLE1, myb dom...		Lus10017096 [exp]	16.5	0.8673
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10001081 [exp]	19.0	0.8364
AT1G76070			unknown protein		Lus10005623 [exp]	22.5	0.8635
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10016920 [exp]	29.4	0.8597
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Lus10031817 [exp]	31.9	0.8246
AT2G02870			Galactose oxidase/kelch repeat...		Lus10036735 [exp]	35.9	0.8456
AT5G19890			Peroxidase superfamily protein...		Lus10025535 [exp]	36.3	0.8559

Compare expression of checked genes

Lus10011184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.