Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32420 46 / 2e-05 F-box and associated interaction domains-containing protein (.1) AT2G40925 43 / 0.0002 F-box and associated interaction domains-containing protein (.1) AT2G02030 42 / 0.0004 F-box family protein (.1) AT4G38870 42 / 0.0006 F-box and associated interaction domains-containing protein (.1) AT1G47730 41 / 0.0007 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011190 [exp] 514 / 0 AT1G32420 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) Lus10018460 [exp] 303 / 2e-101 AT1G32420 66 / 9e-12 F-box and associated interaction domains-containing protein (.1) Lus10011210 [exp] 250 / 1e-79 AT1G32420 87 / 7e-19 F-box and associated interaction domains-containing protein (.1) Lus10013934 [exp] 236 / 2e-74 AT1G11270 72 / 7e-14 F-box and associated interaction domains-containing protein (.1.2.3) Lus10007277 [exp] 228 / 2e-71 AT3G04660 82 / 6e-17 F-box and associated interaction domains-containing protein (.1) Lus10007285 [exp] 228 / 4e-71 AT3G04660 82 / 7e-17 F-box and associated interaction domains-containing protein (.1) Lus10022939 [exp] 214 / 3e-67 AT1G52490 56 / 2e-08 unknown protein Lus10022937 [exp] 214 / 4e-67 AT1G52490 56 / 2e-08 unknown protein Lus10016866 [exp] 206 / 4e-61 AT1G32420 84 / 2e-17 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G129400 [exp] 41 / 0.001 AT4G12560 100 / 3e-23 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF08268 [flax] [poplar] FBA_3 F-box associated domain
Representative CDS sequence Show only first row Show all	>Lus10011186 pacid=23147095 polypeptide=Lus10011186 locus=Lus10011186.g ID=Lus10011186.BGIv1.0 annot-version=v1.0 ATGGTGGATGTACCCAACAAAGTCAAGAAGAAGAATAAGAAGAAGCGGGGATTTCAGTTTGGTTCCTTAGTCCTTGAAAGCTTAGGAAGATGGAAGGAAC CAAAAGAGGAAGAAGAAGAAGCCGGGATTTTAGTTTGCACCGGACAAGCTGTCACACCATGGATCCGATCGACGGTCTCGAGGAAGGGTGGTCGAATACT GATATGTGGATTTGGATTTGACCCCCAGACGGGGGAACATAAAGTTGTTTTCGTGTGGCATGATGTTCATACAACAGCTAGTTGTGAGGTGTTGACTGTA GGGGTGGACATTAGTTGGAGAATGATTGTTGCTGTACCTCCTCTACTTGGATTCATCGGATTTTCGGATACTTATGCCAATGGTTCCATCTATTGGATGG TGTCAGACGAGGGTCCTCGTCGACGACGACCACGTAACAGAAGGAGGGATCCCGGATTATTGGTGGCATTTGCCATTGGATCTGAGAAGTTTAGGGCGAT CGAAATCCCCGAATTTACACTTTCCAGGAGTCTACCGCTCGCCCACTGCGGGTTAATTGAACTGGATGGGTGTATAACGGTGGTGCGCATCTACTCAGGA GCATCACCAACACAGAAGCTATGGAAATTTCACGATCGAAGTGAAAGAGAAGATTGGAGTGAAGTTAGTATCGAAATGCCTTGGTATATATCTCCCTGGA CTCATATTGACTTTCATCCGGTACCTGGGAAAGAGCAGACGATGATCGTGGAAACCCAAGATAAATGGTTTCGCGAATGTCATGTGAAGAATATGAAGAA TGCCTGCTTTTACTGTTACAACATGGTAAACAAGACTTTCAGCAAGTTTGAAATCCGAGGAATTCCCTCCCTTTCAGAAGGAGCCGAAACTTGTTGTAAC TTCTTCGCAGAAGATCTTTTCGCTGCTGCTGCTGACAAAAAATTAGTGAAGAACAAGAGTTGA
AA sequence Show only first row Show all	>Lus10011186 pacid=23147095 polypeptide=Lus10011186 locus=Lus10011186.g ID=Lus10011186.BGIv1.0 annot-version=v1.0 MVDVPNKVKKKNKKKRGFQFGSLVLESLGRWKEPKEEEEEAGILVCTGQAVTPWIRSTVSRKGGRILICGFGFDPQTGEHKVVFVWHDVHTTASCEVLTV GVDISWRMIVAVPPLLGFIGFSDTYANGSIYWMVSDEGPRRRRPRNRRRDPGLLVAFAIGSEKFRAIEIPEFTLSRSLPLAHCGLIELDGCITVVRIYSG ASPTQKLWKFHDRSEREDWSEVSIEMPWYISPWTHIDFHPVPGKEQTMIVETQDKWFRECHVKNMKNACFYCYNMVNKTFSKFEIRGIPSLSEGAETCCN FFAEDLFAAAADKKLVKNKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06240			F-box family protein (.1)		Lus10011186 [exp]	0	1
AT1G32420			F-box and associated interacti...		Lus10011190 [exp]	1.4	0.8777
AT1G03610			Protein of unknown function (D...		Lus10039803 [exp]	7.5	0.8420
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10002697 [exp]	14.0	0.8827
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004559 [exp]	22.0	0.8688
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10013462 [exp]	30.1	0.8677
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10030446 [exp]	31.1	0.8514
AT1G33030			O-methyltransferase family pro...		Lus10009442 [exp]	32.9	0.8636
AT1G76070			unknown protein		Lus10005623 [exp]	35.0	0.8627
AT1G59453			B-block binding subunit of TFI...		Lus10000370 [exp]	37.5	0.8336
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10041088 [exp]	37.6	0.8663

Compare expression of checked genes

Lus10011186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.