Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04950 296 / 2e-99 AtGRXS17 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) AT4G32580 199 / 2e-65 Thioredoxin superfamily protein (.1) AT3G56420 70 / 3e-15 Thioredoxin superfamily protein (.1) AT2G40790 64 / 5e-13 ATCXXS2 C-terminal cysteine residue is changed to a serine 2 (.1) AT3G17880 66 / 2e-12 ATHIP2, ATTDX HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) AT3G54900 62 / 3e-12 ATGRXCP, CXIP1 GLUTAREDOXIN, CAX interacting protein 1 (.1) AT3G15660 62 / 4e-12 ATGRX4 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2) AT1G11530 61 / 6e-12 ATCXXS1 C-terminal cysteine residue is changed to a serine 1 (.1) AT3G51030 56 / 3e-10 ATTRX1, ATTRXH1 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) AT1G43560 55 / 1e-09 ATY2 thioredoxin Y2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018486 [exp] 256 / 1e-88 AT4G04950 195 / 2e-61 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Lus10011187 [exp] 99 / 1e-25 AT4G04950 322 / 8e-110 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Lus10018487 [exp] 99 / 2e-25 AT4G04950 280 / 5e-93 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Lus10007630 [exp] 64 / 7e-13 AT1G11530 143 / 4e-45 C-terminal cysteine residue is changed to a serine 1 (.1) Lus10018383 [exp] 62 / 3e-12 AT1G11530 145 / 3e-46 C-terminal cysteine residue is changed to a serine 1 (.1) Lus10012592 [exp] 62 / 1e-11 AT3G54900 156 / 2e-48 GLUTAREDOXIN, CAX interacting protein 1 (.1) Lus10041501 [exp] 62 / 2e-11 AT3G54900 159 / 4e-49 GLUTAREDOXIN, CAX interacting protein 1 (.1) Lus10029009 [exp] 59 / 4e-11 AT3G08710 126 / 5e-38 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Lus10030505 [exp] 58 / 2e-10 AT3G08710 132 / 8e-40 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G042200 [exp] 316 / 4e-107 AT4G04950 750 / 0.0 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Potri.011G051400 [exp] 308 / 1e-103 AT4G04950 680 / 0.0 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Potri.005G232700 [exp] 66 / 4e-14 AT3G51030 162 / 5e-53 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.016G138800 [exp] 66 / 1e-13 AT3G08710 208 / 1e-70 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Potri.014G141200 [exp] 66 / 3e-13 AT3G54900 197 / 5e-65 GLUTAREDOXIN, CAX interacting protein 1 (.1) Potri.004G031700 [exp] 62 / 2e-12 AT1G11530 179 / 1e-59 C-terminal cysteine residue is changed to a serine 1 (.1) Potri.019G062000 [exp] 62 / 3e-12 AT3G08710 164 / 6e-53 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Potri.015G036000 [exp] 62 / 3e-11 AT3G17880 396 / 3e-137 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.002G030000 [exp] 58 / 6e-11 AT3G51030 160 / 3e-52 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.002G066800 [exp] 58 / 2e-10 AT1G76760 192 / 2e-63 thioredoxin Y1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10011188 pacid=23147103 polypeptide=Lus10011188 locus=Lus10011188.g ID=Lus10011188.BGIv1.0 annot-version=v1.0 ATGGGTGGAGCTGTGAAGGATTTGAAGTCGAAGGCGGAGCTCGACGGACTGCTGAAGAGCGGCGGAGCTCCGGTGATCCTGCACTTCTGGGCGGACTGGT GCGAGACGTCCAAGCAAATGGACCAAGTCTTCTCCCACCTCTCCACCGATTTCCCAGCCGTCAATTTCCTCAGAGTTGAGGCCGAGGAGCAGCCTGAGAT ATCTGAGGCTTACGCTGTATCCGCTGTGCCGTTTGTTGTCTTCTTGAAGGATGGAAAGACTGTTGACAAGTTGGAAGGTTGGGAACCGTCCAGTTTGGCA AACAAAGTCGCGAAAATTGCCGGATCAGTCGACCCTGCATATCCTGCTGCTCCTGCAAGTCTCGGAATGGCTGCTGGGCCGACTATTCTCGAATCAGTTG CTAAAGAACACGGCTCCACTCAACCACCAGCCGATGCTTTGAAGAATCGACTGCAACATCTGATCAATTCAAATCCGATCATGCTCTTCATGAAGGGAAA CGCCGAGGCTCCTCAGTGTGGGTTCAGCAAGAAAGTCGTCAACATACTGAAAGAAGAGAACGTCAAGTTCGGAACTTTCGATATCCTATCCGACAACGAG GTTCGCGAAGGATTGAAGAAGTGTTAA
AA sequence Show only first row Show all	>Lus10011188 pacid=23147103 polypeptide=Lus10011188 locus=Lus10011188.g ID=Lus10011188.BGIv1.0 annot-version=v1.0 MGGAVKDLKSKAELDGLLKSGGAPVILHFWADWCETSKQMDQVFSHLSTDFPAVNFLRVEAEEQPEISEAYAVSAVPFVVFLKDGKTVDKLEGWEPSSLA NKVAKIAGSVDPAYPAAPASLGMAAGPTILESVAKEHGSTQPPADALKNRLQHLINSNPIMLFMKGNAEAPQCGFSKKVVNILKEENVKFGTFDILSDNE VREGLKKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10011188 [exp]	0	1
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Lus10008681 [exp]	2.8	0.9023
AT5G51300			splicing factor-related (.1.2....		Lus10038932 [exp]	2.8	0.8951
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Lus10016850 [exp]	3.0	0.8728
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10015696 [exp]	4.5	0.8937
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031201 [exp]	4.6	0.8958
AT1G35660			unknown protein		Lus10006047 [exp]	6.0	0.8686
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10004973 [exp]	6.2	0.8424
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10027835 [exp]	6.3	0.8727
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10022666 [exp]	6.6	0.9042
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10035813 [exp]	8.9	0.8745

Compare expression of checked genes

Lus10011188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.