Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04930 586 / 0 DES-1-LIKE fatty acid desaturase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018485 [exp] 691 / 0 AT4G04930 587 / 0.0 fatty acid desaturase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G050800 [exp] 599 / 0 AT4G04930 573 / 0.0 fatty acid desaturase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase PF08557 [flax] [poplar] Lipid_DES Sphingolipid Delta4-desaturase (DES)
Representative CDS sequence Show only first row Show all	>Lus10011189 pacid=23147148 polypeptide=Lus10011189 locus=Lus10011189.g ID=Lus10011189.BGIv1.0 annot-version=v1.0 ATGGGGAAAGGTGGGGAGAGGATGTCGGCAATGGAGAAGAAAGAGGAGGAAGAAGGATTAATGGCGACGGATTTCTTCTGGTCTTACACCGACGAGCCTC ACGCTTCTCGCAGGAAGCAGATCCTCTCTCGTTACCCTCAGATTAAGCAGCTCTTCGGCCCTGACCCCTGGGCTTTCCCCAAGATCACAGTGGTCGTAAT GCTGCAACTATATACAGCAACATTGCTCCACGACTCATCCTGGCTAAAAATGCTAGCAATAGCCTACTTCTTCGGCTCGTTCCTCAACCACAACCTCTTT CTCGCCATCCACGAGCTCAGCCACAACCTAGCATTCTCTTCACCCTTCCACAACCGCTGCCTCGGAATCTTCGCCAACCTCCCCATCGGCGTCCCAATGT CCGTCACCTTCCAAAAGTACCACCTCGAACACCACCGCTTCCAAGGAGTCGACGGCATCGACATGGACATCCCATCCCAAACCGAAGCCCACTTAGTGAC CAACATTGCCTCGAAGTCCATATGGGTCCTCCTCCAGCTCTTCTTCTACGCCCTCCGCCCGCTCTTCCTCAAACCGAAACCTCCCGGGTACTGGGAGTTC GTCAACTTCTCGGTTCAAATCCTACTCGACTCAGCCATGGTCTACTTCTTCGGATGGAAATCGTTCGCCTACTTAATCTTGTCAACTTTCGTCGGAGGCG GGATGCACCCAATGGCTGGCCATTTCATCTCCGAGCATTACGTGTTCAACCCCGAACAGGAGACTTATTCGTACTACGGGCCCCTCAATCTGCTGACGTG GCACGTGGGGTACCACAATGAACACCATGACTTCCCCAGGATCCCTGGGAATAAGCTTCAGAAGGTGAAGGAGATTGCGCCGGAGTACTATGACAGCTTG GAGTCTTACAAGTCTTGGAGCCAGGTTATATACATGTACGTCATGGACCGGACGGTCGGACCGTTTAGCCGGATGAAGAGGAAAGTCGGTTCGGGTGCTG TAAAGAAATCAGAGTGA
AA sequence Show only first row Show all	>Lus10011189 pacid=23147148 polypeptide=Lus10011189 locus=Lus10011189.g ID=Lus10011189.BGIv1.0 annot-version=v1.0 MGKGGERMSAMEKKEEEEGLMATDFFWSYTDEPHASRRKQILSRYPQIKQLFGPDPWAFPKITVVVMLQLYTATLLHDSSWLKMLAIAYFFGSFLNHNLF LAIHELSHNLAFSSPFHNRCLGIFANLPIGVPMSVTFQKYHLEHHRFQGVDGIDMDIPSQTEAHLVTNIASKSIWVLLQLFFYALRPLFLKPKPPGYWEF VNFSVQILLDSAMVYFFGWKSFAYLILSTFVGGGMHPMAGHFISEHYVFNPEQETYSYYGPLNLLTWHVGYHNEHHDFPRIPGNKLQKVKEIAPEYYDSL ESYKSWSQVIYMYVMDRTVGPFSRMKRKVGSGAVKKSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Lus10011189 [exp]	0	1
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10033860 [exp]	1.4	0.8746
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002915 [exp]	3.0	0.8702
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10010472 [exp]	3.5	0.8644
AT5G24020		ARC11, ATMIND1,...	ACCUMULATION AND REPLICATION O...		Lus10038843 [exp]	3.7	0.8516
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Lus10018485 [exp]	4.5	0.8595
AT3G16060			ATP binding microtubule motor ...		Lus10037546 [exp]	5.5	0.8720
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10002801 [exp]	11.1	0.7923
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10004650 [exp]	11.6	0.8481
AT4G27585			SPFH/Band 7/PHB domain-contain...		Lus10032909 [exp]	12.2	0.8561
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Lus10016617 [exp]	13.9	0.8356

Compare expression of checked genes

Lus10011189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.