Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32420 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) AT1G47790 79 / 2e-15 F-box and associated interaction domains-containing protein (.1) AT4G21240 71 / 5e-13 F-box and associated interaction domains-containing protein (.1) AT3G61340 68 / 4e-12 F-box and associated interaction domains-containing protein (.1) AT5G65850 67 / 1e-11 F-box and associated interaction domains-containing protein (.1) AT4G38870 67 / 2e-11 F-box and associated interaction domains-containing protein (.1) AT2G02030 64 / 6e-11 F-box family protein (.1) AT1G50870 64 / 1e-10 F-box and associated interaction domains-containing protein (.1) AT1G11270 63 / 1e-10 F-box and associated interaction domains-containing protein (.1.2.3) AT3G23960 63 / 2e-10 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011186 [exp] 511 / 0 AT3G06240 45 / 3e-05 F-box family protein (.1) Lus10018460 [exp] 427 / 4e-147 AT1G32420 66 / 9e-12 F-box and associated interaction domains-containing protein (.1) Lus10011210 [exp] 396 / 2e-133 AT1G32420 87 / 7e-19 F-box and associated interaction domains-containing protein (.1) Lus10007277 [exp] 374 / 3e-125 AT3G04660 82 / 6e-17 F-box and associated interaction domains-containing protein (.1) Lus10007285 [exp] 373 / 8e-125 AT3G04660 82 / 7e-17 F-box and associated interaction domains-containing protein (.1) Lus10013934 [exp] 369 / 6e-123 AT1G11270 72 / 7e-14 F-box and associated interaction domains-containing protein (.1.2.3) Lus10016866 [exp] 355 / 2e-115 AT1G32420 84 / 2e-17 F-box and associated interaction domains-containing protein (.1) Lus10011197 [exp] 323 / 5e-104 AT1G47790 86 / 6e-18 F-box and associated interaction domains-containing protein (.1) Lus10022937 [exp] 256 / 6e-81 AT1G52490 56 / 2e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G458400 [exp] 88 / 2e-18 AT2G31470 113 / 8e-28 DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) Potri.001G035500 [exp] 69 / 2e-12 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013000 [exp] 68 / 7e-12 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.019G062900 [exp] 65 / 3e-11 AT1G50870 69 / 1e-12 F-box and associated interaction domains-containing protein (.1) Potri.012G014300 [exp] 65 / 6e-11 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.017G058900 [exp] 64 / 9e-11 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.010G207500 [exp] 64 / 1e-10 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.011G037312 [exp] 63 / 2e-10 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1) Potri.007G074084 [exp] 63 / 2e-10 AT1G11270 83 / 1e-17 F-box and associated interaction domains-containing protein (.1.2.3) Potri.001G318400 [exp] 62 / 4e-10 AT3G06240 142 / 3e-38 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF08268 [flax] [poplar] FBA_3 F-box associated domain CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10011190 pacid=23147161 polypeptide=Lus10011190 locus=Lus10011190.g ID=Lus10011190.BGIv1.0 annot-version=v1.0 ATGGGTTGCCAATGCGGAGGAGAGCCAAGTGACACTAATTTCTGTCTGCCAAGAGATACGGACACTTTCGAGGATGAAGCAAAAGTGTCGAGGAACAATG GCAACACCATATACCTAAGAGAGCTTTATCAAAGGACATTGGAGACTACAAATCCAACCCCATTTGTGAAGCGACATACTGCAGTTTTACTGACAGGTCG AGAGGCTGAAAGAGTTGGCTTTCAAACCAATAGTGGAGCTATTAAGGAAAAGAATAAGAAGAAGCGGGGATTTCAGTTTGGTTCCTTAGTCCTTGAAAGC TTAGGAAGATGGAAGGAACCAAAAGAGGAAGAAGAAGAAGCAGGGATTTTAAGGAGGAAGAGGAGGAAGGAGCAGGAGCAGAAGATACCCACGATAAATA AGAATGATTTCCACGACGATCTGGTAGCTACACAGATACTTAGCAGACTCCCGGCCAAGTCACTTATGCGGTTCAAGTCCGTCTCTAAATCCTGGAAATC GACCATCGAACGGGATTCGCACTTCATCCGTTCACACCGCGCACATTCACAATCACGGCCCCCGCGTTTGTTGACTATAGTCCGCGATCTGAAAGGTCAT TACGATTTCTTGTCAGCCGAACTGGACTATGGCGGCGATGGTGTTGGTGTTAGAGGAGCTAGTATTCGGAGCGCATTGAGCGTGGCAATACGGATCCCGG ATATTGTATGGTTGGGACCTGCTGGGGGATTGATCTGTTTCGTTGACTATCGCCGCTATGGTGTACTAATTTACAATGTTAGCACCGGACAAGCTGTCAC ACCATGGATCCGATCGACGGTCTCGAGGAAGGGTGGTCGAATACTGATATGTGGATTTGGATTTGACCCCCAGACGGGGGAACATAAAGTTGTTTTCGTG TGGCATGATGTTCATACAACAGCTAGTTGTGAGGTGTTGACTGTAGGGGTGGACATTAGTTGGAGAATGATTGTTGCTGTACCTCCTCTACTTGGATTCA TCGGATTTTCGGATACTTATGCCAATGGTTCCATCTATTGGATGGTGTCAGACGAGGGTCCTCGTCGACGACGACGACGTAACAGAAGGAGGGATCCCGG ATTATTGGTGGCATTTGCCATTGGATCTGAGAAGTTTAGGATGATCGAAATCCCCGAATTTACACTTTCCAGGAGTCTACCGCTCGCCCACTGCGGGTTA ATTGAACTGGATGGGTGTATAACGGTGGTGCGCATCTACTCAGGAGCATCACCAACACAGAAGCTATGGAAATTTCACGATCGAAGTGAAAGAGAAGATT GGAGTGAAGTTAGTATCGAAATGCCTTGGTATATATCTCCCTGGACTCATATTGACTTTCATCCGGTACCTGGGAAAGAGCAGACGATGATCGTGGAAAC CCAAGATAAATGGTTTCGCGAATGTCATGTGAAGAATATGAAGAATGCCTGCTTTTACTGTTACAACATGGTAAACAAGACTTTCAGCAAGTTTGAAATC CGAGGAATTCCCTCCCTTTCAGAAGGAGCCGAAACTTGTTGTGAATTCTTCGCAGAAGATCTTTTCGCTGCTGCTGCCGACAAAAAATTAGTGAAGAACA AGAGTTGA
AA sequence Show only first row Show all	>Lus10011190 pacid=23147161 polypeptide=Lus10011190 locus=Lus10011190.g ID=Lus10011190.BGIv1.0 annot-version=v1.0 MGCQCGGEPSDTNFCLPRDTDTFEDEAKVSRNNGNTIYLRELYQRTLETTNPTPFVKRHTAVLLTGREAERVGFQTNSGAIKEKNKKKRGFQFGSLVLES LGRWKEPKEEEEEAGILRRKRRKEQEQKIPTINKNDFHDDLVATQILSRLPAKSLMRFKSVSKSWKSTIERDSHFIRSHRAHSQSRPPRLLTIVRDLKGH YDFLSAELDYGGDGVGVRGASIRSALSVAIRIPDIVWLGPAGGLICFVDYRRYGVLIYNVSTGQAVTPWIRSTVSRKGGRILICGFGFDPQTGEHKVVFV WHDVHTTASCEVLTVGVDISWRMIVAVPPLLGFIGFSDTYANGSIYWMVSDEGPRRRRRRNRRRDPGLLVAFAIGSEKFRMIEIPEFTLSRSLPLAHCGL IELDGCITVVRIYSGASPTQKLWKFHDRSEREDWSEVSIEMPWYISPWTHIDFHPVPGKEQTMIVETQDKWFRECHVKNMKNACFYCYNMVNKTFSKFEI RGIPSLSEGAETCCEFFAEDLFAAAADKKLVKNKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32420			F-box and associated interacti...		Lus10011190 [exp]	0	1
AT3G06240			F-box family protein (.1)		Lus10011186 [exp]	1.4	0.8777
AT1G52320			unknown protein		Lus10035887 [exp]	9.5	0.8200
AT4G02600		MLO1, ATMLO1	MILDEW RESISTANCE LOCUS O 1, S...		Lus10001336 [exp]	18.2	0.7201
AT1G59453			B-block binding subunit of TFI...		Lus10000370 [exp]	18.6	0.8024
AT5G14610			DEAD box RNA helicase family p...		Lus10032133 [exp]	23.0	0.8021
AT5G01760			ENTH/VHS/GAT family protein (....		Lus10014155 [exp]	29.1	0.7740
AT5G07360			Amidase family protein (.1.2)		Lus10043019 [exp]	43.8	0.7342
AT4G08540			DNA-directed RNA polymerase II...		Lus10004883 [exp]	51.3	0.7511
AT5G06560			Protein of unknown function, D...		Lus10029342 [exp]	57.1	0.7581
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10039977 [exp]	74.3	0.7026

Compare expression of checked genes

Lus10011190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.