Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04920 1853 / 0 AtSFR6, SFR6 sensitive to freezing 6 (.1.2) AT2G47960 567 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018482 [exp] 1025 / 0 AT4G04920 831 / 0.0 sensitive to freezing 6 (.1.2) Lus10018483 [exp] 857 / 0 AT2G47960 585 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G040300 [exp] 2011 / 0 AT4G04920 1813 / 0.0 sensitive to freezing 6 (.1.2) Potri.011G049700 [exp] 1994 / 0 AT4G04920 1790 / 0.0 sensitive to freezing 6 (.1.2) Potri.004G040400 [exp] 1965 / 0 AT4G04920 1764 / 0.0 sensitive to freezing 6 (.1.2) Potri.004G040500 [exp] 661 / 0 AT2G47960 578 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06159 [flax] [poplar] DUF974 Protein of unknown function (DUF974)
Representative CDS sequence Show only first row Show all	>Lus10011192 pacid=23147175 polypeptide=Lus10011192 locus=Lus10011192.g ID=Lus10011192.BGIv1.0 annot-version=v1.0 ATGAGCAATCAGCCACTTCCACAGCAAGAGCAGGAGGAGGAAGATGACGTGGATGTTGACGTAGAAGAGGAGGAGGAAGTGGAAGAGGAAGAAGCGGGCG GAATTAGCAAAGAGCCAGACGAGGACGGCGTTGCTCAGGCTTTGGAAGTTGCAGCGAAGGCGGCTGCGGCTGCGGCGGCTGTAGCGGTGACGGCGGCGGT GTCATCGGAGAAGGTGGAGGTGGTGATTGGAGGCGAGGAGGAAGAGAGTGTGGAGAAAGTTGACGATCCGATGGAGGAGGATTCGCTTGGTCCGGCTAGC AAAGAGCAAGCGGGGGACGGCGTGGTCGGGGCTTTGGGAGGGGCAGCGAAGGCGGCTGCGGCTGCGGCGGCTGTAGCGGTGACGGCGGCGGTGTCATCGG AGAAGGTGGAGGTGGTGATTGGAGGCGAGGAGGAAGAGAGTGTGGAGAAAGTTGACGATCCGATGGAGGAGGATTCGCTTGGTCCGGCTACTGTGTTCAG TATCAAGCTTAAACAGCCCAGGTCGAATTTGATGCATAAGATGAGCGTGCCTGAGCTTTGTCGCAATTTCAGTGCTGTTGCTTGGTGTGGGAAATTGAAT GCTATTGCATGTGCATCGGAAACCTGTGCAAGAATTCCAAGTTCCAATGCAAATCCTCCATTTTGGATCCCCATACACATTGTCATCCCGGAGCGGCCAA CTGAATGTGCTGTTTTTAACGTAATAGCAGATTCACCTCGTGATTCTGTTCAGTTTATTGAATGGTCTCCTACCTCGTGCCCTCGTGCCTTGCTTATCGC TAATTTCCATGGGAGGATAACTGTTTGGACACAACCTTCTCATGGTCCTGCTAACTTGGTACGTGATGCCAGTTGCTGGCAGCGCGAACATGAATGGCGG CAAGATATAGCAGTTGTTACTAAGTGGCTATCTGGCGTTTCTCCATATAGGTGGCTATCTTCTAAATCGAGTGCCAGTTCAAATCCAAAGTCAACTTTTG AGGAAAAGTTTCTTTCACAGCACTCTCAGAATTCAGCGAGGTGGCCCAATTTCCTTTGTGTTTGTTCTGTTTTCTCATCCGGCTCAGTACAACTTCATTG GTCCCAGTGGCCCGCTAGTCAAAGCAATACATCACCAAAATGGTTTTCCACCAGCAAAGGACTTCTGGGCGCTGGACCTAGTGGGATCATGGCTGCTGAT GCTATCATAACGGATAGTGGTGCTATGCATGTTGCTGGTGTTCCTATTGTCAATCCGTCTACTGTTGTAGTGTGGGAAGTTACCCCTGGACCTGGAACTG GTCTACAAGCAACTCCAAAAACGAGTTCTAGTTGCGGTGTCCCTCCTTCACTGAATCCTCCCAATTGGGCAGGTTTTGCTCCCTTGGCTGCTTATTTGTT TAGTTGGCAAGAATATCTGATATCTGAAATAAAGCAAGGGAAGAAACATACAGATAAAGATTTATGCGATGGTGTAGCACTTCATTGTTCTCCTGTTTCG AACTTTTCTGCTTATGTGAGTCCTGAGGCTGCAGCTCAATCGGCAACAACCACTACCTGGGGATCTGGAGTCACTGCTGTTGCTTTTGATCCTACTCGTG GTGGCTCTGTGATAGCAGTTGTGATAGTCGAAGGGCAATATATGTCTCCTTACGATCCGGACGAGGGCCCTTCTATAACAGGATGGAGGGTGCAACGGTG GGAATCATCTCTTCAGCCTGTCGTTCTTCATCAAATATTCGGAAGTCCGACATCCAGTTTCGGTGGCCAGGCACCAATGCAAACTGTATGGGTGTCCAAA GTGGACACTAGCATAGCGCCGACTAATGATTTTAAAAATCATCAAGAAGCTGTGGCAGGACCAAACTCCGATGTCAAGAAAACAACCGATGTGGGCGTTG AGAATGCTAAAAGAGTGATTTTTGATCCGTTTGATCTGCCAAGTGATGTTAGAACTCTTGCCCGAATCGTATACTCTGCTCATGGAGGTGAAATTGCCAT TGCCTTTCTACGTGGTGGAGTGCACATTTTTTCTGGTCCAAACTTCGCCCCTGTAGATAACTACCAAATTAATGTTGGATCGGCAATTGCTTCACCTGCT TTCTCTTCTACAAGCTGCTGCTCGGCTTCTGTTTGGCATGACACTAGCAAGGAGTGCACCATATTAAAGATAATTCGAGTTCTCCCTCCTGCTGTCCCAA GCAGTCAAATAAAGGCCAACTCCGCGACTTGGGAACGTGCAATTGCAGAAAGGTTTTGGTGGAGCCTATTGGTTGGCGTTGATTGGTGGGATGCTGTTGG GTGTACGCAGAGTGCTGCTGAAGATGGCATTGTTTCACTCAACAGTGTCATTGCAGTCCTGGATGCAGATTTCCACTCTCTTCCCTCTGTACAGCATAGA CAACAGTATGGTCCGAGCCTTGACAGGATCAAATGTAGGCTATTGGAGGGTACAAATGCTCAGGAGGTTAGGGCCATGGTTCTTGATATGCAAGCAAGAC TGCTGCTTGATATGCTCGGCAAAGGCATCGAGTCCGCCTTGATCAATCCTTCGGCATTAGTAGCTGAACCATGGCAGGCATCTGGTGAGACATTATCTGG TATTGATCCTGAAGCAATGGCTGTTGATCCAAGCCTCGTCCCAAGTATACAGGCATATGTCGACGCAATTCTCGATCTGTCATCACATTTTATCACTCGT TTGCGGCGGTATGCAAGTTTCTGCCGCACGTTAGCTAGCCATGCTGTTACTGCAGGCACGGGGAACAATCGCAACATGGTGACTAGTCCTACCCAGAGTG CGGCATCCCAGGCAACTACTCCCGGTGGTCAAACTGCCACAACAAATGCCACGGGAAGCACTCAGGTGCAAGCTTGGGTGCAAGGAGCTATTGCTAAGAT TAGTAGCACATCAGACGGGGTGCCTAGTTCTGCTCCAAACCCCATTAGCGGTCCACCTCCCTTTATGCCCATAAGCATCAACACCGGGACATTCCCGGGA ACTCCTGCTGTTCGGCTTATCGGAGACTGCCATTTTGTTCACAGATTATGCCAGCTTCTGCTCTTTTGCTTCTTCTTTCGTAGAACACAACTCACACGCT CTGGTGCAGTTTCACAGAGAAATAATGATTCTAATATGCAAAAACCTCAGCCTGGTCTCCCCGGCAAGGTTGAGGAGTCCAATGCTGCTTCTGGGAAACC GGCGACAGCTATGGTTAGTAGAGCAGAGGAAGGCCCAGGAGCACGAAGTGGTCAGATTGTGCCTGGAACGAAAGGAGCTGAAGACGGACCGGCTGGCCGT TCCCGACTAGGCTGTGGCAATGCTGGTCAGGGATACACTTTTGAAGAGGTGAAGGTACTTTTTCTTATTCTCATGGACCTTTGCCGGCGAACAGCAGCTC TGGCACACCCGTTGCCAGTTTCACAGGTGGGAAGTAACAACATTCAGGTCCGACTGCATTATATCGATGGCAATTATACTGTCTTGCCAGAGGTTGTAGA AGCATCTCTTGGCCCACATATGCAGAATATGCCCAGGCCTAGAGGAGCTGATGCTGCCGGTCTCTTGCTACGTGAGTTGGAACTTCATCCACCATCCGAA GAGTGGCACCGACGCAATATGTTTGGCGGCCCGTGGTCTGATCCAGAGGACGTAAATTCCCCCGAGGAGACACCCAAATCTTCCGACTTGCTAGATTTCA GCTCATTAGAGAATTGCGATGTGCATTACGGCCCTCACGGTATCTGGCCCAAGAGGCGCAGGTTGTCCGAGAGAGACGCTGCTTTTGGCTTGAACACATC GGTCGGCCTAGGAGCTTATCTCGGGATAATGGGATCTCGTAGAGACGTGGTTACTGCTCTTTGGAAGACCGGCCTGGAAGGAGATTGGTTCAAGTGCATA AGATGTTTACGGCAGACTTCAGCCTTTGCTTCGCCGAGCACCACAAACCCCGGTAGTTCTAATGAACGTGAGACGTGGTGGATCAGTCGTTGGGCTTATG GATGTCCCATGTGTGGGGGAACATGGGTTCGGCTCTTCTTTAATCTCACCAGTTCCGATCAAGCAGGATACTGCCGTAGGCGAGCTTCCGGTGAACAACT CATCATGAGCACTGTAACGCACTCGCTGGCGTTCAGAGTGATGCGCCTCTGCCGGCCATCGCTCCACGTCGACACGCAGCTGCGCATCGATCCCGCCGAT CTCTTGGTCGGCGAGGACATCTTCGACGATCCGATCGCCGCCGCGCAGCTCCCTTCTCTACTCGACGGCTTGACTCCGAAGTCCAAGGACTCCGCCGATC TCAGCTACGGAAACAGATTTCCACTTAGCCATCCCTTCGATTCCTTCGGGCACACTGGCCTTCTCGTCCTTCCTCAAGCCTTCGGGGCGATATATTTAGG GGAGACGTTCTGTAGCTACATAAGCATCAACAACAGCTCGAACTTCGAAGTTAGGGATGTGATTATTAAGGCAGAAATCCAGACTGAGAGGCAGAGGATC TTGTTGTTAGACACTTCTAAATCGCCTGTTGAATCGATCCGCTCTAGTGGCCGCTATGACTTCATTGTGGAGCATGATGTGAAGGAACTCGGAGCTCATA CGTTGGTGTGCACTGCTTTGTATAGTGATGGCGATGGAGAACGTAAATATCTTCCACAGTTCTTCAAGTTTATAGTCGCAAATCCTCTTTCAGTTAGGAC TAAGGTATGTCCATGCTGCCTATTCCTTCAGGAAAATACATATCTAGAGGCATGCATTGAGAACCACACAAAGGCAAACCTTTACATGGACCAAGTCGAG TTTGAGCCAGCTCAGCCGTGGACAGCACAAGTATTAAAATCCAATGAACAACCAGTTGATAATGACATTGTATCCAGGACAATTTTCAAACCGCCTGTAC TCGTGAGATCCGGTGGAGGAATCCACAACTATCTCTATCACCTAAAAACGACTTCACAAGATCCTGTACGCAATAACGTTCTTGGAAAGCTTCAGATTAC TTGGCGAACCAATCTAGGTGAACCCGGTCGCCTACAGACACAACAGATTCTTAGCACTCCTGTCACTCCGAAGGAGATTGAGTTGCGAATTTTGGAGATT CCGTCGGTTCTCAACTTGAATCGACCATTCTCGGTACATCTCAATCTAGCTAATCAGACAGATAGAGCATTAGGGCCATTTGAAGTCTGGCTTTCACAAA GTAGCCCGTTAGGCGAGAAAGCAGTCATGATCAATGGCCTACAGACAATGGAGTTACCCAAGTTGGAGGCATCTGCGACAACTGATTTCCACTTGAATCT CATTGCTACCAAGCTCGGAGTCCAGAGAATAACGGGCATCACAGTGTTGAACACAGCGGACAAGACAGTTTACGATCCTCTACCCGATTTCGAGGCAAGT TTCGGTATCACTAGAATGTCCCCTGTCGCGTCTTTGACCGATCATCATCTCACTATGCCAATTTTTACTGCAGATTTTCGTGGACGTCGATTGATTCTTG TATAA
AA sequence Show only first row Show all	>Lus10011192 pacid=23147175 polypeptide=Lus10011192 locus=Lus10011192.g ID=Lus10011192.BGIv1.0 annot-version=v1.0 MSNQPLPQQEQEEEDDVDVDVEEEEEVEEEEAGGISKEPDEDGVAQALEVAAKAAAAAAAVAVTAAVSSEKVEVVIGGEEEESVEKVDDPMEEDSLGPAS KEQAGDGVVGALGGAAKAAAAAAAVAVTAAVSSEKVEVVIGGEEEESVEKVDDPMEEDSLGPATVFSIKLKQPRSNLMHKMSVPELCRNFSAVAWCGKLN AIACASETCARIPSSNANPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRITVWTQPSHGPANLVRDASCWQREHEWR QDIAVVTKWLSGVSPYRWLSSKSSASSNPKSTFEEKFLSQHSQNSARWPNFLCVCSVFSSGSVQLHWSQWPASQSNTSPKWFSTSKGLLGAGPSGIMAAD AIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGTGLQATPKTSSSCGVPPSLNPPNWAGFAPLAAYLFSWQEYLISEIKQGKKHTDKDLCDGVALHCSPVS NFSAYVSPEAAAQSATTTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQPVVLHQIFGSPTSSFGGQAPMQTVWVSK VDTSIAPTNDFKNHQEAVAGPNSDVKKTTDVGVENAKRVIFDPFDLPSDVRTLARIVYSAHGGEIAIAFLRGGVHIFSGPNFAPVDNYQINVGSAIASPA FSSTSCCSASVWHDTSKECTILKIIRVLPPAVPSSQIKANSATWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSVQHR QQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVAEPWQASGETLSGIDPEAMAVDPSLVPSIQAYVDAILDLSSHFITR LRRYASFCRTLASHAVTAGTGNNRNMVTSPTQSAASQATTPGGQTATTNATGSTQVQAWVQGAIAKISSTSDGVPSSAPNPISGPPPFMPISINTGTFPG TPAVRLIGDCHFVHRLCQLLLFCFFFRRTQLTRSGAVSQRNNDSNMQKPQPGLPGKVEESNAASGKPATAMVSRAEEGPGARSGQIVPGTKGAEDGPAGR SRLGCGNAGQGYTFEEVKVLFLILMDLCRRTAALAHPLPVSQVGSNNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPSE EWHRRNMFGGPWSDPEDVNSPEETPKSSDLLDFSSLENCDVHYGPHGIWPKRRRLSERDAAFGLNTSVGLGAYLGIMGSRRDVVTALWKTGLEGDWFKCI RCLRQTSAFASPSTTNPGSSNERETWWISRWAYGCPMCGGTWVRLFFNLTSSDQAGYCRRRASGEQLIMSTVTHSLAFRVMRLCRPSLHVDTQLRIDPAD LLVGEDIFDDPIAAAQLPSLLDGLTPKSKDSADLSYGNRFPLSHPFDSFGHTGLLVLPQAFGAIYLGETFCSYISINNSSNFEVRDVIIKAEIQTERQRI LLLDTSKSPVESIRSSGRYDFIVEHDVKELGAHTLVCTALYSDGDGERKYLPQFFKFIVANPLSVRTKVCPCCLFLQENTYLEACIENHTKANLYMDQVE FEPAQPWTAQVLKSNEQPVDNDIVSRTIFKPPVLVRSGGGIHNYLYHLKTTSQDPVRNNVLGKLQITWRTNLGEPGRLQTQQILSTPVTPKEIELRILEI PSVLNLNRPFSVHLNLANQTDRALGPFEVWLSQSSPLGEKAVMINGLQTMELPKLEASATTDFHLNLIATKLGVQRITGITVLNTADKTVYDPLPDFEAS FGITRMSPVASLTDHHLTMPIFTADFRGRRLILV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04920		AtSFR6, SFR6	sensitive to freezing 6 (.1.2)		Lus10011192 [exp]	0	1
AT3G45190			SIT4 phosphatase-associated fa...		Lus10021468 [exp]	1.7	0.8636
AT2G47330			P-loop containing nucleoside t...		Lus10011466 [exp]	6.9	0.8502
AT3G12570		FYD	FYD (.1.2.3.4)		Lus10040301 [exp]	9.3	0.7613
AT2G25320			TRAF-like family protein (.1)		Lus10002926 [exp]	11.9	0.8402
AT4G23460			Adaptin family protein (.1)		Lus10032286 [exp]	14.3	0.8368
					Lus10035796 [exp]	23.2	0.7236
AT5G11430			SPOC domain / Transcription el...		Lus10013146 [exp]	24.8	0.8158
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Lus10036271 [exp]	26.4	0.8390
AT4G23460			Adaptin family protein (.1)		Lus10024654 [exp]	27.1	0.8343
AT1G11160			Transducin/WD40 repeat-like su...		Lus10011224 [exp]	29.7	0.8203

Compare expression of checked genes

Lus10011192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.