Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09010 411 / 5e-143 Protein kinase superfamily protein (.1) AT1G16670 351 / 2e-119 Protein kinase superfamily protein (.1) AT1G56145 323 / 4e-102 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56140 321 / 4e-101 Leucine-rich repeat transmembrane protein kinase (.1) AT1G07650 317 / 8e-100 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56120 318 / 9e-100 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 315 / 5e-99 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 313 / 4e-98 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 311 / 1e-97 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53440 310 / 5e-97 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018481 [exp] 724 / 0 AT3G09010 414 / 7e-143 Protein kinase superfamily protein (.1) Lus10001212 [exp] 517 / 0 AT3G09010 384 / 2e-128 Protein kinase superfamily protein (.1) Lus10004825 [exp] 404 / 3e-140 AT3G09010 496 / 5e-176 Protein kinase superfamily protein (.1) Lus10002494 [exp] 371 / 1e-126 AT3G09010 462 / 3e-162 Protein kinase superfamily protein (.1) Lus10042460 [exp] 354 / 7e-121 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10026207 [exp] 355 / 8e-121 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10042851 [exp] 324 / 2e-108 AT1G16670 429 / 3e-149 Protein kinase superfamily protein (.1) Lus10028149 [exp] 320 / 2e-107 AT1G16670 434 / 6e-152 Protein kinase superfamily protein (.1) Lus10019933 [exp] 317 / 3e-106 AT1G16670 364 / 1e-124 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G040200 [exp] 558 / 0 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 531 / 0 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.016G114800 [exp] 424 / 4e-148 AT3G09010 486 / 3e-172 Protein kinase superfamily protein (.1) Potri.001G438400 [exp] 344 / 2e-116 AT1G16670 529 / 0.0 Protein kinase superfamily protein (.1) Potri.011G142100 [exp] 342 / 1e-115 AT1G16670 530 / 0.0 Protein kinase superfamily protein (.1) Potri.011G112000 [exp] 336 / 2e-113 AT1G16670 476 / 2e-168 Protein kinase superfamily protein (.1) Potri.001G393200 [exp] 332 / 8e-111 AT1G16670 471 / 2e-165 Protein kinase superfamily protein (.1) Potri.010G221400 [exp] 322 / 1e-108 AT1G16670 379 / 9e-131 Protein kinase superfamily protein (.1) Potri.007G067900 [exp] 328 / 1e-103 AT1G56130 1290 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G082900 [exp] 326 / 6e-103 AT1G56140 1097 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10011193 pacid=23147090 polypeptide=Lus10011193 locus=Lus10011193.g ID=Lus10011193.BGIv1.0 annot-version=v1.0 ATGAGTTGCAGCTGCTTTGGTTCCACGGCGGTTCGTCGGAAGCACGGCGGCATCGGCAGCTCTGGGGATCACAACGTTATTGATGGTGATTTGCTCCAGG ATGTCAATCACATAGCCTATAACACGTTGAGATCCGCGACAGACGATTTCGATCCGAGGAAGAAGATCGGGCAAGGTGGCTTTGGGACTGTTTACAAGGG GACTTTAAAAAGTGGGAAACAGATTGCTGTGAAAGCCCTCTCTGTACATTCGAGGCAAGGGGTTCGTGAGTTCTTGAACGAAATTCGAGCAATGTCGAAG GCTAAGCATCCGAACCTCGTGGAGTTGGTAGGGTGCTGTGTTCAGGGAGCTAACCGGATACTAGTCTACGAGTTTGTAGAAAATAACAGTCTTGAGTACT GTTTGTTAGGTGCGAGGAATCCGAATGTGAAACTAGACTGGGGGCAACGAGCTGCCATTTGCTTGGGAATTGCTCGAGGCCTTGCTTATCTCCATGAAGA GCTGGTGCCACACATTGTTCATAGAGACATTAAAGCCAGCAATATTCTCCTGGACAGGGATTTGAACCCGAAAATCGGTGATTTCGGGTTGGCTAAACTC TTTCCGGATGACATTACTCATATCAGCACAAGGATTGCAGGAACCACTGGCTATTTGGCACCAGAGTATGCACTAGGTGGTCAACTAACCAAGAAGGCCG ACATCTATAGCTTTGGAATCCTCGTCCTCGAAACAATCAGTGCCAGAAGTAGTTCGAGGTGCAGTTGGGGAGGAACGCTGAAGCTCCTGCTAGAACAGGC ATGGGAAATGTACGAAGAAGGGAGGCTCCTTGAGCTGGTGGATCCAGAGATGGGAGAGTTCCCGGAAGAAGAAGTCGTACGGCACATGAAAGTAGCCTTC TTCTGCACTCAAGCCACGGCGAACAGGAGGCCGTCGATGAGCCAAGTCGTCGACATGCTATCGTCGACAAACATCCGACTCAACGACAAGCTACTCACCG CCCCGGGCTTCTTCCCCGACTCAGACGGTGTAAATAACAAGAAGTCATCTGCACTGTCTTCCGGCCAGCACCTTAGCAGCTCGGTTCCCGTTACAATTAC TGAAGTCGCGCCTAGGTGA
AA sequence Show only first row Show all	>Lus10011193 pacid=23147090 polypeptide=Lus10011193 locus=Lus10011193.g ID=Lus10011193.BGIv1.0 annot-version=v1.0 MSCSCFGSTAVRRKHGGIGSSGDHNVIDGDLLQDVNHIAYNTLRSATDDFDPRKKIGQGGFGTVYKGTLKSGKQIAVKALSVHSRQGVREFLNEIRAMSK AKHPNLVELVGCCVQGANRILVYEFVENNSLEYCLLGARNPNVKLDWGQRAAICLGIARGLAYLHEELVPHIVHRDIKASNILLDRDLNPKIGDFGLAKL FPDDITHISTRIAGTTGYLAPEYALGGQLTKKADIYSFGILVLETISARSSSRCSWGGTLKLLLEQAWEMYEEGRLLELVDPEMGEFPEEEVVRHMKVAF FCTQATANRRPSMSQVVDMLSSTNIRLNDKLLTAPGFFPDSDGVNNKKSSALSSGQHLSSSVPVTITEVAPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09010			Protein kinase superfamily pro...		Lus10011193 [exp]	0	1
AT4G25150			HAD superfamily, subfamily III...		Lus10007939 [exp]	4.6	0.8723
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10011870 [exp]	5.5	0.8737
AT2G19460			Protein of unknown function (D...		Lus10027629 [exp]	5.5	0.9051
					Lus10021100 [exp]	6.7	0.8849
AT1G72280		AERO1	endoplasmic reticulum oxidored...		Lus10023292 [exp]	7.3	0.8546
AT1G76360			Protein kinase superfamily pro...		Lus10013223 [exp]	9.7	0.8851
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10017129 [exp]	10.8	0.8778
AT3G09760			RING/U-box superfamily protein...		Lus10026501 [exp]	13.9	0.8653
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10041799 [exp]	14.1	0.8471
AT5G01750			Protein of unknown function (D...		Lus10002477 [exp]	14.4	0.8572

Compare expression of checked genes

Lus10011193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.