Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20760 194 / 2e-59 Clathrin light chain protein (.1) AT2G40060 164 / 8e-49 CLC2 clathrin light chain 2, Clathrin light chain protein (.1) AT3G51890 160 / 3e-47 Clathrin light chain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018480 [exp] 476 / 3e-170 AT2G20760 239 / 4e-77 Clathrin light chain protein (.1) Lus10018582 [exp] 173 / 4e-51 AT2G20760 195 / 2e-59 Clathrin light chain protein (.1) Lus10039815 [exp] 162 / 2e-47 AT2G20760 189 / 2e-57 Clathrin light chain protein (.1) Lus10004389 [exp] 153 / 1e-44 AT2G40060 220 / 9e-72 clathrin light chain 2, Clathrin light chain protein (.1) Lus10030401 [exp] 151 / 9e-44 AT2G40060 197 / 2e-62 clathrin light chain 2, Clathrin light chain protein (.1) Lus10040187 [exp] 148 / 2e-42 AT2G40060 211 / 3e-68 clathrin light chain 2, Clathrin light chain protein (.1) Lus10037839 [exp] 0 / 1 AT2G40060 135 / 4e-42 clathrin light chain 2, Clathrin light chain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G040100 [exp] 224 / 3e-71 AT2G20760 216 / 7e-68 Clathrin light chain protein (.1) Potri.011G049500 [exp] 222 / 1e-70 AT2G20760 201 / 2e-62 Clathrin light chain protein (.1) Potri.019G102000 [exp] 206 / 1e-63 AT2G20760 212 / 2e-65 Clathrin light chain protein (.1) Potri.016G114700 [exp] 176 / 2e-53 AT2G40060 217 / 2e-70 clathrin light chain 2, Clathrin light chain protein (.1) Potri.008G066800 [exp] 164 / 5e-49 AT2G40060 191 / 3e-60 clathrin light chain 2, Clathrin light chain protein (.1) Potri.010G190400 [exp] 163 / 2e-48 AT2G40060 215 / 1e-69 clathrin light chain 2, Clathrin light chain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01086 [flax] [poplar] Clathrin_lg_ch Clathrin light chain
Representative CDS sequence Show only first row Show all	>Lus10011194 pacid=23147091 polypeptide=Lus10011194 locus=Lus10011194.g ID=Lus10011194.BGIv1.0 annot-version=v1.0 ATGGCTTCCTTCGACGACGCGTACGGAATCGACGGAGAAGTGGTCAACGAGACGAACCACGGATCCTTCCACGAAGACGACGACCAGGAGAGCTACTCCA CCAACTTCGGCTCCTACTCGAACTTCGCCAGCAGCGGTGCGCCGGAGTTCTCAAGTGGAATGGATGTGCCGGTGGATCAGCAACCGGCTGGCGAGGGATT CGGATTCGGATCTTCCTCGGCTGAGCTGGATCCAGCTCCTTTCGGCTCGATCCACGCGGAGAACGGCAACGGGAATGGATATGGCGCAGCTGATGAGGAT TTGTTTACTTCCGATGGACCTGTGCTGCCTCCGCCTACTGAGATGCAGGAGGAAGGAGCTGCTCTTCGTGAATGGCGGCGTCAGAATGCAATCTACCTTG ACGAGAAGGAGAAGAAAGAGAAGGAAATGAGGCAGCAGATAATCGAAGAAGGCGAGGAGTACATCCGCGCCTTCTACGAGAAGAGGACGATCAACATCGA GACGAACAAGACCTCCAACAGAGAAAGGGAGAAGATCTCGTTGGTGAATCAGGAGAAGTTCCACAAGGAAGCCGACAAGCAGTACTGGAAGGCAATCGCC GAGATCATTCCTTATGAGGTCCCCAACATCGAGAAGAAGAGAGGCAAGAAAGAGCAGGACAAGAAACCAGGCATCACCGTCCTTCAAGGACCAAAACCCG GAAAACCCACCGATCTCTCGAGGATGCGACAGATCCTCGTGAAGCTGAAACACACCCCTCCACCACACATGGTCCCTCCTCCCCCACCTGCCCCGGCCAC CACCAAGGACGGGAAGAAGCCTACAACAAAGGATGCCAAAACTGGGAAAGAAAATGTCGCGAAAAGCTCAGATGCCAACGGCTCTTCTCACCCGCCCGAG GTCACCGCTGCTCCTGCTGTGGACGAACAGCCTGCCGTGGCAGAGCCAGTCGTCAGCACAGAAGTACCGACTCCAAGTGCCTAG
AA sequence Show only first row Show all	>Lus10011194 pacid=23147091 polypeptide=Lus10011194 locus=Lus10011194.g ID=Lus10011194.BGIv1.0 annot-version=v1.0 MASFDDAYGIDGEVVNETNHGSFHEDDDQESYSTNFGSYSNFASSGAPEFSSGMDVPVDQQPAGEGFGFGSSSAELDPAPFGSIHAENGNGNGYGAADED LFTSDGPVLPPPTEMQEEGAALREWRRQNAIYLDEKEKKEKEMRQQIIEEGEEYIRAFYEKRTINIETNKTSNREREKISLVNQEKFHKEADKQYWKAIA EIIPYEVPNIEKKRGKKEQDKKPGITVLQGPKPGKPTDLSRMRQILVKLKHTPPPHMVPPPPPAPATTKDGKKPTTKDAKTGKENVAKSSDANGSSHPPE VTAAPAVDEQPAVAEPVVSTEVPTPSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20760			Clathrin light chain protein (...		Lus10011194 [exp]	0	1
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10037096 [exp]	3.0	0.9448
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Lus10036886 [exp]	4.0	0.9392
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10005504 [exp]	5.9	0.9261
AT1G71990		ATFT4, ATFUT13,...	ARABIDOPSIS FUCOSYLTRANSFERASE...		Lus10006076 [exp]	6.3	0.9258
AT3G29360		UGD2	UDP-glucose dehydrogenase 2, U...		Lus10036887 [exp]	6.3	0.9338
AT4G08810		SUB1	calcium ion binding (.1)		Lus10013761 [exp]	7.1	0.9384
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10014234 [exp]	7.2	0.9354
AT5G57460			unknown protein		Lus10000167 [exp]	10.6	0.9133
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Lus10010070 [exp]	11.6	0.9238
AT5G03080			Phosphatidic acid phosphatase ...		Lus10019919 [exp]	12.4	0.9224

Compare expression of checked genes

Lus10011194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.