Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21670 620 / 0 FRY2, FLP1, ATCPL1, CPL1 FIERY 2, C-terminal domain phosphatase-like 1 (.1) AT5G01270 518 / 5e-171 CPL2, ATCPL2 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018479 [exp] 1719 / 0 AT4G21670 1100 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1) Lus10027766 [exp] 507 / 6e-162 AT5G01270 820 / 0.0 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G040000 [exp] 1183 / 0 AT4G21670 1139 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1) Potri.011G049400 [exp] 1171 / 0 AT4G21670 1108 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1) Potri.016G114600 [exp] 546 / 0 AT5G01270 923 / 0.0 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2) Potri.006G099402 [exp] 185 / 2e-53 AT5G01270 294 / 2e-95 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2) Potri.006G099302 [exp] 163 / 2e-43 AT5G01270 363 / 6e-119 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase CL0196 [flax] [poplar] DSRM PF00035 [flax] [poplar] dsrm Double-stranded RNA binding motif
Representative CDS sequence Show only first row Show all	>Lus10011195 pacid=23147121 polypeptide=Lus10011195 locus=Lus10011195.g ID=Lus10011195.BGIv1.0 annot-version=v1.0 ATGTCGAAATCGGCGGTGGTTTATAGAGGGGACGAGTTGTTGGGGGAAGTGGAGATATACGCGCAGGATGAAGTTATGGTGGAAGGGGAGACGAAGAACA GCAGCAGTTTCAACTTGAGGAACAACAAGAACAGAGTGATAATCGACGAGACGTTGGTCTCCGGGAAGGAAATCAGGATAACAAACTTCTCGCCGCCGAG CGAGAGGTGTCCGCCGTTGGCGGTGTTGCATACGATTAGTTCGACTGGGATTCTGTTCAAAATGGAGCCCAGGAATCCGCTGACACAACAGAGTACTCCG CTCCATTTCTTGCACTCCACACTTATTCAAGACAACAAGACTGCAGTGATGAGGGTAGGAGTGAACGAGCTCCATTTGGTTGCATTGCATTCCAGAAATG GTGGTGTCTGTCCATGTTTCTGGGGATTCCTCGTTGCAGAGGGACTCTATGAGTCTGGTTTAACCATGCTGAACTTGAGATGTCTCGGCATTGTATTTGA TCTCGACGAAACACTTATAGTTGCAAACACGATGCGGTCGTTTGAAGATAGAATCGATGGTCTGCAGAGGAAAATAAGTACAGAGGTGGACCCGCAGCGT GTTGCGGGTATGCTTGCTGAAGTAAAGCGTTATCAGGATGACAAGAGCATATTGAAGCAATATGTGGAGAATGATCAGGTTATTGAGAATGGGAAGGTGA TAAGGACTGTGTCTGAGATTGTCCCTCCTGCTTCTGATAGCCATCAGCCTATAGTGCGCCCATTAATTCGGTTACAAGAGAAGAACATTATCTTGACTCG CATCAATCCGCAGATTCGGGACACAAGTGTTCTTGTGAGGTTGAGACCTGCATGGGAGGATCTGAGAAGCTACTTGACTGCCAGAGGTCGCAAGCGGTTT GAAGTTTATGTTTGCACAATGGCTGAAAGAGATTATGCTTTGGAAATGTGGAGGCTTCTTGATCCAGAATCAAATTTAATAAACTCAAAAGAACTTTTGG ACCGCATTGTATGTGTGAAAGCTGGTCTAAGGAAAGCATTGTTCAATGTCTTTCAAGATGGAACCTGCCATCCTAAGATGGCATTGGTGATTGATGATCG TTTGAAAGTTTGGGATGATAAAGATCAACCTCGGGTGCATGTTGTTCCTGCATTTGCTCCATATTATGCTCCCCAAGCTGAAGCAAATAATGCGATTCCA GTTTTATGTGTTGCAAGAAATGTTGCATGCAATGTCAGAGGTGGTTTTTTCAAAGAGTTTGATGAGGGTCTTCTACAGAAGATACCTGAAATTTCATATG AAGACAATATTCTTGATATTCCTTCTCCTCCTGATGTGAGCAATTACTTGGTTTCTGAGGAAGCAGCTTCAGCTTCAGCTTCTTCAGTCTTACCTCCAGT AGCTTCAGCTTCTTCAGTCTTACCTCCAGCAGTCCCCATTATTGACCCAAGGCTTGTTTCATCTCTCCAGTACACAGTGGCATCTTCTTCAAGCTCAATT GCCATGCCAATATCACAGCCGCCTGTTGTGCCCTTTTCTAGTGTCCAGTTTCCTCAGGCACCTTCTTTAGCTAAGCCTATAGGTCTGACAGATCCCAGCT TCTCTGGTTCTCCTGCTAGAGAAGAAGGTGAGGTTCCTGAATCTGAGCTAGACCCTGATACAAGAAGGCGACTACTTATATTGCAACATGGGCAAGATAC AAGAGATGTTCCTCCAAGTGAGCCTCCATTTCCAGTACGACCTCAGATACCGGTTCCAGCTCCACGTTTGCCGTCGCAATCTCGTGGAAGTTGGGTTCCT GTGGAGGAGGAGATGAGCCCTAGGCAAATGAACAGATCGATGCCTAGAGAATATCCTCCTGAACAAGAGCCGATGCATATTGAAAAGCGCCGACCTCATC ATCCCTCCTATTTCCCAAAGGTCGATGGTGCAATTCCTTCGGATAGAATGATTCATGATAATCAAAGATTATCAAAAGAGTTACAGGCAAATTACAGAGA TGACAGACCAAGGCTGAACCAGCCTTGGTCCGGTTACCAGCCTTTCCCAGGTGAGGCTGTACCATTTAGTCGCTCATCTAGCAACAGGGATATTGACTTT GAACAGGAAAGACATGTATCGGGTGGTGAATCTTCTGTGGGAGTGTTGCAGGATATTGCAATGAAGTGTGGTACCAAGGTGGAGTTCAGACCTTCTTTAG TTGCTAGCAGAGATCTGCAGTTTTCTATTGAGGTTTTGTTTGCGGGAGACAAGGTTGGTGAAGGTATTGGCAAGACAAGACGGGAAGCGCAACGTGAGGC AGCTGATGGTTCTCTGAGAAGTCTTGCTAGCATGTACACGTCACGTTCCAAGACAGATTCTACACTGTTACATGGAGATGCACCGAGATATTATGGTCCA ACCGACAATGGTTTCTCTGGTAACGCGAGTTCATTTGACAATCAACCAAAAGATGATGCTGGTCCATTTTCACATCTGGATCCAAGATTTGAAGGCTCTA AGCATTTAACGGGTCCAGTTTCAGCTCTCAAAGAGTTTTGCATGATGGAAGGCCTTGGGATGAGATTCCTCCCAGATACTCCAGTTAATTCGTACCAGAA AGACGAGATCCATGCACAGGTTGAAGTAGATGGACAGGTTATGGGGAGGGGAATTGGATCTTCCTGGGATGAAGCTAGGATGCTGGCTGCTGACCGGGCT CTTGGAAGTCTACGGCCAATGTTCGGTCAATCTACGCACAAACGGCAGGGTTCACCTAGGTCCTTGCAAGGGATGTCTAGCAAACGTATGAAGCCCGAAT TCCCACGAATGATGCAGCATCAGCCGCGAATGCCTCCCTCTGCTCGATACTCGAAGAACGCCTCTGCTGTCCCTTGA
AA sequence Show only first row Show all	>Lus10011195 pacid=23147121 polypeptide=Lus10011195 locus=Lus10011195.g ID=Lus10011195.BGIv1.0 annot-version=v1.0 MSKSAVVYRGDELLGEVEIYAQDEVMVEGETKNSSSFNLRNNKNRVIIDETLVSGKEIRITNFSPPSERCPPLAVLHTISSTGILFKMEPRNPLTQQSTP LHFLHSTLIQDNKTAVMRVGVNELHLVALHSRNGGVCPCFWGFLVAEGLYESGLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIDGLQRKISTEVDPQR VAGMLAEVKRYQDDKSILKQYVENDQVIENGKVIRTVSEIVPPASDSHQPIVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRF EVYVCTMAERDYALEMWRLLDPESNLINSKELLDRIVCVKAGLRKALFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIP VLCVARNVACNVRGGFFKEFDEGLLQKIPEISYEDNILDIPSPPDVSNYLVSEEAASASASSVLPPVASASSVLPPAVPIIDPRLVSSLQYTVASSSSSI AMPISQPPVVPFSSVQFPQAPSLAKPIGLTDPSFSGSPAREEGEVPESELDPDTRRRLLILQHGQDTRDVPPSEPPFPVRPQIPVPAPRLPSQSRGSWVP VEEEMSPRQMNRSMPREYPPEQEPMHIEKRRPHHPSYFPKVDGAIPSDRMIHDNQRLSKELQANYRDDRPRLNQPWSGYQPFPGEAVPFSRSSSNRDIDF EQERHVSGGESSVGVLQDIAMKCGTKVEFRPSLVASRDLQFSIEVLFAGDKVGEGIGKTRREAQREAADGSLRSLASMYTSRSKTDSTLLHGDAPRYYGP TDNGFSGNASSFDNQPKDDAGPFSHLDPRFEGSKHLTGPVSALKEFCMMEGLGMRFLPDTPVNSYQKDEIHAQVEVDGQVMGRGIGSSWDEARMLAADRA LGSLRPMFGQSTHKRQGSPRSLQGMSSKRMKPEFPRMMQHQPRMPPSARYSKNASAVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Lus10011195 [exp]	0	1
AT5G11700			unknown protein		Lus10005497 [exp]	3.0	0.9134
AT1G72560		PSD	PAUSED, ARM repeat superfamily...		Lus10015655 [exp]	4.6	0.9136
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10008369 [exp]	8.1	0.9136
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10024282 [exp]	12.5	0.9120
AT4G11800			Calcineurin-like metallo-phosp...		Lus10042668 [exp]	13.7	0.8702
AT2G38840			Guanylate-binding family prote...		Lus10003085 [exp]	22.6	0.8604
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10005068 [exp]	22.6	0.9029
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Lus10039707 [exp]	25.0	0.9021
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10028871 [exp]	26.1	0.9005
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Lus10003868 [exp]	26.2	0.9067

Compare expression of checked genes

Lus10011195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.