Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11060 261 / 5e-74 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1) AT1G61030 241 / 2e-67 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018478 [exp] 1100 / 0 AT1G11060 611 / 0.0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1) Lus10001211 [exp] 598 / 0 AT1G11060 660 / 0.0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1) Lus10005857 [exp] 576 / 0 AT1G11060 653 / 0.0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G039900 [exp] 287 / 1e-83 AT1G11060 662 / 0.0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1) Potri.011G049300 [exp] 258 / 4e-73 AT1G11060 674 / 0.0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07814 [flax] [poplar] WAPL Wings apart-like protein regulation of heterochromatin
Representative CDS sequence Show only first row Show all	>Lus10011196 pacid=23147139 polypeptide=Lus10011196 locus=Lus10011196.g ID=Lus10011196.BGIv1.0 annot-version=v1.0 ATGCCGATCGCCCAAGATCCGAAAAGAAAACCCGACCCGACCAAGATCCGAATCCAGCATCCGCCCAAACAAAACCTCAAATCTCCCACCAAACGGCTAC TCCCCTCTTCAGTTCTTCTCCTTCAAAAGCTCGCCGGAGGAAGCCATTTGAAAAAAGAAAGTCCCCTTCTTTGCTTCTTATTCCGAAAATACCCTTCTAC CCTTTTTTCTTGCTTCGTGTCAAAGGCGATGAACGTCAGAACCTACGGCCGCCGAACCAGAGACGCCGACGACAACGGCGACTACGACTCTTTCTCACTC TCCCAAGAGAAGCCATCTCAGCAGAATTTCCACGAATTCCACTTCTCCTCTCAAGAATCCTCTTCTTTCTGGCCGTCCTCCTCTTCCGCCTCATCTTCCT CCTTTGATCCAGATCCGTACGCTTTCAGTCCGTCGTCTTTCCTCGACAATTCGCCGCCCCCGAGGAAGTCGAAGAAGGCGAGAAAAGGGCAGAATAGTGA CCACGGCGGGGCAACCCTAACTTCTACGCTGATGGAGGCGCAGGAGTTTGGGGAGATGGTGGAGCATGGCGACGAGGTTGATTTCGCCGTTGATGGGTTG AGGAATAGAGTCGCCGGCGGCGGTGGAGGAGTTAGAATCAGGCGGGCCAGCTTGCTGTCCCTCTTGTCGATTTGCGGCACTCCTCAGCAGCGTCGAAATC TCAGGGCTCAAGGGACGGTGAAAACTATAATGGAAGCTCTCTTGAGTCTTAGCCTTGATGATGCACCCAGCAATCTGGCAGCTGCAGCTCTTTTGTATCT TCTCAGTAGTGATGGGCAAGACGATCGCATGTTGGATTCATCTCGTTGCATTCGGTTCTTGCTCAAGCTGTTGAAACCAGTACTTTCTATTGCGACCGAG GACAAGACTCGAAGTTTTGGATGTAAGCTTTTGGGGATAGGCAGAAACCTTAACTTGAATGTCTCGCGCGATACAACCAAAATGGCGATGATGGATTCAG ACTCTTCTGCTGCTATTATAGTCAAAGTTGAGGAAATTCTTATTAGTTGTGAGGAGATTAAGTCCCGGGTTTGGCTCAACAACAAGGGAGTCGAGAAGCC CGAATCGATGTCAAAGTTTGTAGCTCTGCTGATCATGGAGAAAGCTTGCTTGCTTAAGATTTCTCTTGAAGATACGTCGGGGTTGGTAAGGAACATGGAT GGGAACTTTAAGGATAAGTTGCGAGAGCTTGGAGTACTTGATGCTGTCTTTGAAGTCGCCATGAACTGCCACTCTGCTATTGAGGCGAATCTTGAATCAA CTGCCATGCTGAGCCTTGTGATGCTTTTGAAATGCTTAAAGATCATGGAAAATGCCACATTAATGAGTAAAGAGAACCAGGATCATTTACTTGCAATGAG AAAGAACTCTAGCTCTCATGGTTGCCGGATATCGTTTGCCAAGCTTATCATAAGTGTCATCAAGATCTTATCAGGTCTCTATCTTAGAAGCAGCGCTGGC TCGAACAATGGAGTAATATCCATCAGCTCATCAGAATCGGATTGCTGTACTGCAGAAGGGATCTCCCAGAAGAAATCGACAGCAAGACTCGCTCTTTCTG CTTCCATGGATGATGACAATCACCTTCTGAAGATGAGGGTTCGTTCATCGATGTTCAGTTCAAGCAGTGAAACTACTAGTAATGGTTCTAGTAGGACAAG ATGCAATCTTGTCGATTCTGGAAATGATTCCATGTGCAAGGATCCATTTGCATTTGATGAGGATGACTTGGAGCCATCAAAGTGGGATGCGCCATATTGT AAGCCAAAGAAGTCTCTTTCTCGGGCTGCGAAGAAAGCTGCAAAAGAACGTCAGACCGAGAGTCCCTCTGCAGTAACGGTTCAAGAAGAATCTATGAGTC TCGATGGAGATTCCAATTCGAGTGTTTCAGATGAGGAATTGTCTAGTATTGTATCTGAGTGTCTTCTTACTACTGTGAAGGTTCTGATGAATTTGACGAA CGAAAATCCTGCTGGATGTCGGCAAGTTGGTGCCTGTAGAGGGTTGGAGGCTTTGTCTTTGCTGATCGCTGATCACTTCCCTTCGTTCGATTCATCCTCG ATGAAAGAAGGTCCTCGTCTGACTGATCAAGAGTTGGATTTTCTCGTTGCGATATTGGGGCTCCTTATCAATCTGGTAGAGAAGGATGGTCAAAACAGGT CAAGGCTTGCATCAGCTAGCATCTCGTTAGCTGAAGGGTCAGAAGACGAGAGTTGTAAGGATGTAATCCCGCTGTTGTGTTCGATCTTTCTTGCACACCA AGGCAAAGCTGACGATGATCAGTCTGAACAAGGAGATTGCATACAATGGGATGATGAGGCGGCTTTGCTTGAAGGTGAGAAAGAAGCAGAGAAAACGATC GTAGAGGCTTACACTGCACTGCTCCTCGCATTTCTCTCGACTGAAAGCAAGAGCACACGCGAGTCAATTGCTGATTGCCTCCCGAATCGCAGCGTTTCAT GTCTCGTTCCTGTCCTGGAAAGATTCGTGGCGTTCCATTTGATGTTGAACGTGATCTCGCCGGAGACTCACAAGGCAGTGAATGAAGTGATCGCATCGTG TAGGCTGCCATGA
AA sequence Show only first row Show all	>Lus10011196 pacid=23147139 polypeptide=Lus10011196 locus=Lus10011196.g ID=Lus10011196.BGIv1.0 annot-version=v1.0 MPIAQDPKRKPDPTKIRIQHPPKQNLKSPTKRLLPSSVLLLQKLAGGSHLKKESPLLCFLFRKYPSTLFSCFVSKAMNVRTYGRRTRDADDNGDYDSFSL SQEKPSQQNFHEFHFSSQESSSFWPSSSSASSSSFDPDPYAFSPSSFLDNSPPPRKSKKARKGQNSDHGGATLTSTLMEAQEFGEMVEHGDEVDFAVDGL RNRVAGGGGGVRIRRASLLSLLSICGTPQQRRNLRAQGTVKTIMEALLSLSLDDAPSNLAAAALLYLLSSDGQDDRMLDSSRCIRFLLKLLKPVLSIATE DKTRSFGCKLLGIGRNLNLNVSRDTTKMAMMDSDSSAAIIVKVEEILISCEEIKSRVWLNNKGVEKPESMSKFVALLIMEKACLLKISLEDTSGLVRNMD GNFKDKLRELGVLDAVFEVAMNCHSAIEANLESTAMLSLVMLLKCLKIMENATLMSKENQDHLLAMRKNSSSHGCRISFAKLIISVIKILSGLYLRSSAG SNNGVISISSSESDCCTAEGISQKKSTARLALSASMDDDNHLLKMRVRSSMFSSSSETTSNGSSRTRCNLVDSGNDSMCKDPFAFDEDDLEPSKWDAPYC KPKKSLSRAAKKAAKERQTESPSAVTVQEESMSLDGDSNSSVSDEELSSIVSECLLTTVKVLMNLTNENPAGCRQVGACRGLEALSLLIADHFPSFDSSS MKEGPRLTDQELDFLVAILGLLINLVEKDGQNRSRLASASISLAEGSEDESCKDVIPLLCSIFLAHQGKADDDQSEQGDCIQWDDEAALLEGEKEAEKTI VEAYTALLLAFLSTESKSTRESIADCLPNRSVSCLVPVLERFVAFHLMLNVISPETHKAVNEVIASCRLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11060			WAPL (Wings apart-like protein...		Lus10011196 [exp]	0	1
AT1G61140		EDA16	embryo sac development arrest ...		Lus10011211 [exp]	3.6	0.8214
AT5G10370			helicase domain-containing pro...		Lus10023162 [exp]	3.9	0.7867
AT5G35560			DENN (AEX-3) domain-containing...		Lus10017173 [exp]	5.8	0.8084
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10025239 [exp]	6.9	0.7989
AT5G58410			HEAT/U-box domain-containing p...		Lus10042236 [exp]	12.8	0.7868
AT2G41700		AtABCA1, ABCA1	Arabidopsis thaliana ATP-bindi...		Lus10012755 [exp]	13.8	0.7316
AT4G02480			AAA-type ATPase family protein...		Lus10010282 [exp]	15.9	0.7735
AT1G08680		ZIGA4, AGD14	ARF-GAP domain 14, ARF GAP-lik...		Lus10005686 [exp]	21.6	0.6876
AT5G42940			RING/U-box superfamily protein...		Lus10024810 [exp]	24.0	0.7241
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10041978 [exp]	25.0	0.6892

Compare expression of checked genes

Lus10011196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.