Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47790 86 / 6e-18 F-box and associated interaction domains-containing protein (.1) AT1G32420 75 / 1e-14 F-box and associated interaction domains-containing protein (.1) AT3G52320 74 / 4e-14 F-box and associated interaction domains-containing protein (.1) AT1G47765 73 / 1e-13 F-box and associated interaction domains-containing protein (.1) AT4G38870 69 / 2e-12 F-box and associated interaction domains-containing protein (.1) AT3G10240 69 / 3e-12 F-box and associated interaction domains-containing protein (.1) AT1G47730 68 / 4e-12 F-box and associated interaction domains-containing protein (.1) AT1G33530 67 / 9e-12 F-box family protein (.1) AT5G62660 66 / 2e-11 F-box and associated interaction domains-containing protein (.1) AT1G50870 66 / 2e-11 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011200 [exp] 610 / 0 AT1G47790 84 / 2e-18 F-box and associated interaction domains-containing protein (.1) Lus10013934 [exp] 433 / 3e-148 AT1G11270 72 / 7e-14 F-box and associated interaction domains-containing protein (.1.2.3) Lus10016866 [exp] 368 / 4e-120 AT1G32420 84 / 2e-17 F-box and associated interaction domains-containing protein (.1) Lus10011210 [exp] 350 / 1e-115 AT1G32420 87 / 7e-19 F-box and associated interaction domains-containing protein (.1) Lus10011190 [exp] 326 / 3e-105 AT1G32420 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) Lus10007285 [exp] 317 / 5e-103 AT3G04660 82 / 7e-17 F-box and associated interaction domains-containing protein (.1) Lus10007277 [exp] 317 / 7e-103 AT3G04660 82 / 6e-17 F-box and associated interaction domains-containing protein (.1) Lus10018460 [exp] 313 / 2e-102 AT1G32420 66 / 9e-12 F-box and associated interaction domains-containing protein (.1) Lus10022937 [exp] 246 / 4e-77 AT1G52490 56 / 2e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G458400 [exp] 87 / 3e-18 AT2G31470 113 / 8e-28 DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) Potri.017G058000 [exp] 86 / 5e-18 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.002G223000 [exp] 78 / 4e-15 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.014G162600 [exp] 74 / 8e-14 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.007G074084 [exp] 73 / 9e-14 AT1G11270 83 / 1e-17 F-box and associated interaction domains-containing protein (.1.2.3) Potri.019G062900 [exp] 71 / 4e-13 AT1G50870 69 / 1e-12 F-box and associated interaction domains-containing protein (.1) Potri.001G035500 [exp] 71 / 6e-13 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318300 [exp] 71 / 7e-13 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.008G144000 [exp] 69 / 2e-12 AT4G38870 97 / 6e-22 F-box and associated interaction domains-containing protein (.1) Potri.013G093100 [exp] 67 / 6e-12 AT1G50870 80 / 2e-16 F-box and associated interaction domains-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011197 pacid=23147099 polypeptide=Lus10011197 locus=Lus10011197.g ID=Lus10011197.BGIv1.0 annot-version=v1.0 ATGAATCAAGCTGGTCACTCAACATGCATAAACAGAGCATCAGCAGGCAGCAGTAAGCGGACCAAACACTCGAACCTGGGTCTATGCCGAGGTAATCGCT GGCCGGAAAACCAGCGTGGCAACCAGGTACTTGGTGACGATCATTACCAAATCAAAAAAAATCTTCCATTAGAGTCCATGGGGAAAATGGGCTATCAGCC CACAAGTCATACAAAGAGAAGCCCAAAGGTAGTAACACAGGTCCCAATCAAAGGCCACAAACACGCGAGTCCAGATTCGGTGTTGACGCTCTTTTTATCA GTTCCTTGTCCTGAAAAATTAAAAGAAGAAGAAGACGAAGGAAAAAACATATTTGGAACAATGGTGGATTTTAGTTTGAAACCTGATGTTTGGACAAAAA AGAGTGATCTTGATGATGATCTAGTGGTTACCGAGATACTCAGTAGACTCCCAGCCAAGTCACTTATGCGGTTCAAGTCCGTCCGTAAAGGCTGGCGTTC GATTATCGAAAGCGATTTGCACTTTATCAATCTACACCGCACCCATTCACAATCACGCCCCACGAGTCTGTTGGCTATGGTCCTTGAAAGATGTTATATG GACGTGGAAAGAATAAGAATCGGTCGTTTTGATTTATTGTCGGCTGATTTGGACTGTGACGGTAGAGGAGCCAGTATTCGGACCGTAATGAGTGTGACAT CACCCAGTCCATATGCCCCAAGTCCGGATGTTGACGTTCTCGGACCCGCCAGAGGATTGCTCTGTTTCGTTGACGGTGTCAACTTGGGTGTAATGATTTA CAATGTCACCACTCGACAAGCTGTCACGCCATGGATCAGATCGAGCGTGAGGCTAAAGAACCTCTCCTTCAAGCAGCGTCTGGTATTTCAATTTGGATTC GATCCCGATACAGGAGAGCATAAAGTAATCTTGCTGGTGTATCATGCTCCATCATATAGACATACTGCCGTAGCTTGTGAGGTGTTGACTGTAGGGGTTG ACACTAGCTGGAGAATCATTGATGCTGGTGTAATACCTGGAATAATTGAATGTAGTATCCCCAGATTTTACAGTACTTATGCCAATGGTTCCATCTATTG GATGTCTGATGGATACTTACTGGCATTCGACATTGGACCTGAGAAGTTTAGGACGATCAGAATCCCCGAATTCGATCGGTCCCATTTAATTGAACTGGAT GGGTGTCCAACCGTAGTGACGAAAGGGTACGCACCACAAGGCGAGCAAATATATTGGATGTGGAAATTTCATGATCGTAATAAGAATGGAACATCTGATA CTACTGAAAGCGAAGAATGGACTTCATTGAGTATTAAATTCCCTTCTCATGTACCTGTACCGTGGAATCTTTTCTTTTATCCGATACCCGGGAAAGACGA GATCATCTTCGAAACTCATGAAGGATGGCCTCCGGAGACTTTCGAGCATCACTGCTTTTACTCTTACAACAGGGTAAACGAGACTCTCAGCAAGTTTGAA ATGCGAGGAATTCCCTCCCTTCCAGAGGATTCCATAACTCGCTGTAAATTTTTCGTAGAAGATCTGTACCCTGCTGTCGAGGAGAAGATCCGGAGTCGAT ACTCGCGATAA
AA sequence Show only first row Show all	>Lus10011197 pacid=23147099 polypeptide=Lus10011197 locus=Lus10011197.g ID=Lus10011197.BGIv1.0 annot-version=v1.0 MNQAGHSTCINRASAGSSKRTKHSNLGLCRGNRWPENQRGNQVLGDDHYQIKKNLPLESMGKMGYQPTSHTKRSPKVVTQVPIKGHKHASPDSVLTLFLS VPCPEKLKEEEDEGKNIFGTMVDFSLKPDVWTKKSDLDDDLVVTEILSRLPAKSLMRFKSVRKGWRSIIESDLHFINLHRTHSQSRPTSLLAMVLERCYM DVERIRIGRFDLLSADLDCDGRGASIRTVMSVTSPSPYAPSPDVDVLGPARGLLCFVDGVNLGVMIYNVTTRQAVTPWIRSSVRLKNLSFKQRLVFQFGF DPDTGEHKVILLVYHAPSYRHTAVACEVLTVGVDTSWRIIDAGVIPGIIECSIPRFYSTYANGSIYWMSDGYLLAFDIGPEKFRTIRIPEFDRSHLIELD GCPTVVTKGYAPQGEQIYWMWKFHDRNKNGTSDTTESEEWTSLSIKFPSHVPVPWNLFFYPIPGKDEIIFETHEGWPPETFEHHCFYSYNRVNETLSKFE MRGIPSLPEDSITRCKFFVEDLYPAVEEKIRSRYSR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47790			F-box and associated interacti...		Lus10011197 [exp]	0	1
AT1G47790			F-box and associated interacti...		Lus10011200 [exp]	1.0	0.7383
AT1G61100			disease resistance protein (TI...		Lus10025112 [exp]	29.6	0.6484
AT1G15060			Uncharacterised conserved prot...		Lus10000099 [exp]	29.6	0.6303
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10035484 [exp]	32.6	0.6107
AT2G34930			disease resistance family prot...		Lus10016340 [exp]	56.1	0.5211
AT5G38260			Protein kinase superfamily pro...		Lus10025492 [exp]	66.8	0.6027
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Lus10032700 [exp]	77.7	0.5717
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10004544 [exp]	79.7	0.5140
AT1G33530			F-box family protein (.1)		Lus10014979 [exp]	92.2	0.5749
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Lus10019471 [exp]	105.4	0.5694

Compare expression of checked genes

Lus10011197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.