Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011197 [exp] 90 / 7e-22 AT1G47790 86 / 6e-18 F-box and associated interaction domains-containing protein (.1) Lus10011234 [exp] 49 / 1e-07 AT5G22300 274 / 3e-89 nitrilase 4 (.1) Lus10018449 [exp] 42 / 2e-05 AT5G22300 281 / 6e-92 nitrilase 4 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011199 pacid=23147117 polypeptide=Lus10011199 locus=Lus10011199.g ID=Lus10011199.BGIv1.0 annot-version=v1.0 ATGAACAAGAAATGGAAATCCCTTTCCTACTGTTTCAGGTCCCAAGGTCGAGAAGCTATCACAAATGGCGAGGAAGTATGGGGTATCAACGTGGTAATGG GAGTAGTCAGAGAGATCCGGATCGAAGCTCTTCAGCACGGGCTAGGGAATAATGTGGTTGTATCGCCGCCGGAGGGGAAGCTCTTAACTGGGGCTATATA CCACGGAGAATATGTTCTCTTAGCTGATCTTGAGCATCAGCAGGCAGCAGTAAGCGGACCAAATACTCGAACCTGGGTCTATGCCGAGGTATTCGCTGGC CGGAAAACCAGCGTGGCAACCAGGTACTTGGTGACGATCATTACCAAATCAAAAAAATTCTTCCATTAG
AA sequence Show only first row Show all	>Lus10011199 pacid=23147117 polypeptide=Lus10011199 locus=Lus10011199.g ID=Lus10011199.BGIv1.0 annot-version=v1.0 MNKKWKSLSYCFRSQGREAITNGEEVWGINVVMGVVREIRIEALQHGLGNNVVVSPPEGKLLTGAIYHGEYVLLADLEHQQAAVSGPNTRTWVYAEVFAG RKTSVATRYLVTIITKSKKFFH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011199 [exp]	0	1
AT4G04330		AtRbcX1	homologue of cyanobacterial Rb...		Lus10004588 [exp]	16.1	0.6276
AT5G39960			GTP binding;GTP binding (.1)		Lus10014634 [exp]	20.7	0.6115
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10021998 [exp]	22.8	0.5780
AT3G01490			Protein kinase superfamily pro...		Lus10030868 [exp]	24.0	0.5259
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001032 [exp]	148.0	0.4868

Compare expression of checked genes

Lus10011199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.