Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47790 84 / 3e-18 F-box and associated interaction domains-containing protein (.1) AT1G32420 76 / 9e-16 F-box and associated interaction domains-containing protein (.1) AT3G52320 76 / 2e-15 F-box and associated interaction domains-containing protein (.1) AT1G47765 73 / 2e-14 F-box and associated interaction domains-containing protein (.1) AT1G47730 69 / 6e-13 F-box and associated interaction domains-containing protein (.1) AT1G50870 67 / 2e-12 F-box and associated interaction domains-containing protein (.1) AT3G10240 67 / 2e-12 F-box and associated interaction domains-containing protein (.1) AT4G19940 67 / 3e-12 F-box and associated interaction domains-containing protein (.1) AT4G38870 67 / 3e-12 F-box and associated interaction domains-containing protein (.1) AT5G62660 66 / 4e-12 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011197 [exp] 610 / 0 AT1G47790 86 / 6e-18 F-box and associated interaction domains-containing protein (.1) Lus10013934 [exp] 322 / 3e-108 AT1G11270 72 / 7e-14 F-box and associated interaction domains-containing protein (.1.2.3) Lus10016866 [exp] 290 / 2e-93 AT1G32420 84 / 2e-17 F-box and associated interaction domains-containing protein (.1) Lus10011210 [exp] 273 / 5e-89 AT1G32420 87 / 7e-19 F-box and associated interaction domains-containing protein (.1) Lus10007277 [exp] 251 / 1e-80 AT3G04660 82 / 6e-17 F-box and associated interaction domains-containing protein (.1) Lus10007285 [exp] 251 / 2e-80 AT3G04660 82 / 7e-17 F-box and associated interaction domains-containing protein (.1) Lus10011190 [exp] 249 / 8e-79 AT1G32420 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) Lus10018460 [exp] 237 / 4e-76 AT1G32420 66 / 9e-12 F-box and associated interaction domains-containing protein (.1) Lus10007606 [exp] 196 / 4e-61 AT1G47790 67 / 3e-12 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G458400 [exp] 88 / 1e-19 AT2G31470 113 / 8e-28 DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) Potri.017G058000 [exp] 87 / 3e-19 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.002G223000 [exp] 75 / 4e-15 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.001G318300 [exp] 72 / 4e-14 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.007G074084 [exp] 72 / 5e-14 AT1G11270 83 / 1e-17 F-box and associated interaction domains-containing protein (.1.2.3) Potri.019G062900 [exp] 72 / 6e-14 AT1G50870 69 / 1e-12 F-box and associated interaction domains-containing protein (.1) Potri.001G035500 [exp] 71 / 8e-14 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.014G162600 [exp] 71 / 8e-14 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.013G093100 [exp] 68 / 8e-13 AT1G50870 80 / 2e-16 F-box and associated interaction domains-containing protein (.1) Potri.006G013000 [exp] 66 / 7e-12 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011200 pacid=23147089 polypeptide=Lus10011200 locus=Lus10011200.g ID=Lus10011200.BGIv1.0 annot-version=v1.0 ATGGTGGATTTTAGTTTGAAACCTGATGTTTGGACAAAAAAGAGTGATCTTGATGATGATCTAGTGGTTACCGAGATACTCAGTAGACTCCCAGCCAAGT CACTTATGCGGTTCAAGTCCGTCCGTAAAGGCTGGCGTTCGATTATCGAAAGCGATTTGCACTTTATCAATCTACACCGCACCCATTCACAATCACGCCC CACGAGTCTGTTGGCTATGGTCCTTGAAAGATGTTATATGGACGTGGAAAGAATAAGAATCGGTCGTTTTGATTTATTGTCAGCTGATCTGGACTGTGAC GGTAGAGGAGCCAGTATTCGGACCGTAATGAGTGTGACATCGCCCAGTCCATATGCCCCAAGTCCGGATGTTGACGTTCTCGGACCCGCTAGAGGATTGC TCTGTTTCGTTGACGGTGTCAACTTGGGTGTAATGATTTACAATGTCACCACTCGACAAGCTGTCACGCCATGGATCAGATCGAGCGTGAGGCTAAAGAA CCTCTCCTTCAAGCAGCGTCTGGTATTTCAATTTGGATTCGATCCCGATACAGGAGAGCATAAAGTAATCTTGCTGGTGTATCATGCTCCATCATATAGA CATACTGCCGTAGCTTGTGAGGTGTTGACTGTAGGGGTTGACACTAGCTGGAGAATCATTGATGCTGGTGTAATACCTGGAATAATTGAATGTAGTATCC CCAGATTTTACAGTACTTATGCCAATGGTTCCATCTATTGGATGTCTGATGGATACTTACTGGCATTCGACATTGGACCTGAGAAGTTTAGGACGATCAG AATCCCCGAATTCGATCGGTCCCATTTAATTGAACTGGATGGGTGTCCAACCGTAGTGACGAAAGGGTACGCACCACAAGGCGAGAAAATATATTGA
AA sequence Show only first row Show all	>Lus10011200 pacid=23147089 polypeptide=Lus10011200 locus=Lus10011200.g ID=Lus10011200.BGIv1.0 annot-version=v1.0 MVDFSLKPDVWTKKSDLDDDLVVTEILSRLPAKSLMRFKSVRKGWRSIIESDLHFINLHRTHSQSRPTSLLAMVLERCYMDVERIRIGRFDLLSADLDCD GRGASIRTVMSVTSPSPYAPSPDVDVLGPARGLLCFVDGVNLGVMIYNVTTRQAVTPWIRSSVRLKNLSFKQRLVFQFGFDPDTGEHKVILLVYHAPSYR HTAVACEVLTVGVDTSWRIIDAGVIPGIIECSIPRFYSTYANGSIYWMSDGYLLAFDIGPEKFRTIRIPEFDRSHLIELDGCPTVVTKGYAPQGEKIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47790			F-box and associated interacti...		Lus10011200 [exp]	0	1
AT1G47790			F-box and associated interacti...		Lus10011197 [exp]	1.0	0.7383
AT3G15470			Transducin/WD40 repeat-like su...		Lus10027670 [exp]	52.1	0.6796
AT5G58510			unknown protein		Lus10031857 [exp]	83.6	0.6605
AT4G15250	CO	COL11	B-box type zinc finger protein...		Lus10039695 [exp]	93.6	0.6375
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10042669 [exp]	107.8	0.6458
AT3G49290		ABIL2	ABL interactor-like protein 2 ...		Lus10032421 [exp]	109.2	0.6048
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10013393 [exp]	118.9	0.6369
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10026233 [exp]	126.8	0.6223
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10010547 [exp]	158.9	0.6247
AT2G33810	SBP	SPL3	squamosa promoter binding prot...		Lus10013999 [exp]	172.9	0.6051

Compare expression of checked genes

Lus10011200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.