Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02340 191 / 2e-58 alpha/beta-Hydrolases superfamily protein (.1) AT3G51000 190 / 4e-58 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 174 / 1e-51 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 169 / 4e-50 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 159 / 1e-46 ATSEH soluble epoxide hydrolase (.1) AT4G15955 155 / 5e-45 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G26750 154 / 3e-44 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011204 [exp] 385 / 9e-135 AT4G02340 181 / 8e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10001210 [exp] 369 / 3e-128 AT4G02340 189 / 5e-58 alpha/beta-Hydrolases superfamily protein (.1) Lus10005858 [exp] 367 / 2e-127 AT4G02340 192 / 3e-59 alpha/beta-Hydrolases superfamily protein (.1) Lus10018477 [exp] 360 / 7e-125 AT4G02340 181 / 6e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10039814 [exp] 354 / 1e-122 AT4G02340 216 / 3e-68 alpha/beta-Hydrolases superfamily protein (.1) Lus10036177 [exp] 352 / 7e-122 AT4G02340 203 / 3e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10038312 [exp] 347 / 1e-119 AT4G02340 202 / 4e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10010293 [exp] 208 / 3e-65 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10008683 [exp] 202 / 6e-63 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G048000 [exp] 436 / 7e-155 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G039700 [exp] 355 / 6e-123 AT3G51000 203 / 2e-63 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134800 [exp] 346 / 1e-119 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134900 [exp] 337 / 5e-116 AT4G02340 209 / 8e-66 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127200 [exp] 202 / 4e-63 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 198 / 2e-61 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 197 / 5e-61 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 176 / 4e-53 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 171 / 9e-51 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 170 / 2e-50 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10011202 pacid=23147124 polypeptide=Lus10011202 locus=Lus10011202.g ID=Lus10011202.BGIv1.0 annot-version=v1.0 ATGGACCAAATCCAGCACAAGTTCGTCACGGTCAACGGTTCGAATCTCCACCTCGCTGAAATCGGAGCAGGTGATAAAGTTGTGGTGTGCCTCCATGGTT TCCCGGAGATATGGTACTCGTGGCGGCACCAGATGATCGCCCTCGCAGCAGGCGGGTACAGGGTCATCGCCCCGGATCACCGTGGATACGGCTTATCCGA CCCTGGACCCGAACCGGAGAAGACCAAGTTCGCCGACTTGATCGATGATCTCCGTTGCATTCTAGACCTCCTCAACATCCCCAAGGTAACGGTTGTAGCG AAAGATTTTGGTGTTCTTCCGGGATACTATTTTGCGCTGATTTACCCGGACAGAGTGCTCGGCGTGGTTACGCTTGGTGTTCCGTTCGTCCCGCCGGGTG CGATTCAGTACCATAAGCATCTACCTGAAGGGTTCTACTTCACCCGATGGAAGGAGCCGGGTCGAGCAGAGGCCGATTTCGGCCGGTTCGATTCGAAAAC CGTGGTGAGAAAAATCTACACCATGTTCTCCAAAACAGAGGTTCCTATAGCTTCAGAAGAACAAGAGATTATGGATTTGGTTGATACATCAAGAATTCCT TTACCCGATTGGTTAACCGAAGAGGATTTCGATACTTATGGATCTCTATACGAGAAATCCGGTTTCGAAACAGCTCTACAAGTACCCTATAGATCGTTTG ATGAAGAGTATGAAATGGCGAGTTTGGAAGTGAAAGTTCCGGCGATGTTGATCGCCGGCGAGAAGGACTACGTGCTCAACTTCCCCGGAATGGAGGATTA CATAAGGAGCGGCAAAGTGAAAGACTTTGTGCCGGATTTGGAGACGGTGTTCTTGCCGGAAGGGACTCATTTCGTTCAGGAGCAATTGCCAGAGGAAGTT AATGAGCTGATCTTGAAATTCCTCAACACAAAGATAATCTGGTCTTGA
AA sequence Show only first row Show all	>Lus10011202 pacid=23147124 polypeptide=Lus10011202 locus=Lus10011202.g ID=Lus10011202.BGIv1.0 annot-version=v1.0 MDQIQHKFVTVNGSNLHLAEIGAGDKVVVCLHGFPEIWYSWRHQMIALAAGGYRVIAPDHRGYGLSDPGPEPEKTKFADLIDDLRCILDLLNIPKVTVVA KDFGVLPGYYFALIYPDRVLGVVTLGVPFVPPGAIQYHKHLPEGFYFTRWKEPGRAEADFGRFDSKTVVRKIYTMFSKTEVPIASEEQEIMDLVDTSRIP LPDWLTEEDFDTYGSLYEKSGFETALQVPYRSFDEEYEMASLEVKVPAMLIAGEKDYVLNFPGMEDYIRSGKVKDFVPDLETVFLPEGTHFVQEQLPEEV NELILKFLNTKIIWS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10011202 [exp]	0	1
AT1G47530			MATE efflux family protein (.1...		Lus10026323 [exp]	2.4	0.9439
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10003128 [exp]	6.2	0.9563
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040271 [exp]	6.7	0.9394
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014498 [exp]	7.5	0.9457
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10013282 [exp]	10.4	0.8973
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10029552 [exp]	11.8	0.9231
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10011013 [exp]	12.5	0.8733
AT5G57260		CYP71B10	"cytochrome P450, family 71, s...		Lus10030189 [exp]	12.7	0.9346
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Lus10017618 [exp]	16.1	0.9241
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10002379 [exp]	17.8	0.9439

Compare expression of checked genes

Lus10011202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.