Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023372 [exp] 224 / 1e-70 AT3G16210 67 / 5e-12 F-box family protein (.1) Lus10015408 [exp] 177 / 2e-52 AT3G16210 64 / 6e-11 F-box family protein (.1) Lus10028961 [exp] 105 / 1e-25 AT4G12560 81 / 2e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10001105 [exp] 89 / 5e-20 AT3G06240 109 / 3e-26 F-box family protein (.1) Lus10013988 [exp] 85 / 2e-18 AT3G49180 471 / 4e-160 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10027824 [exp] 77 / 6e-16 AT3G06240 78 / 2e-15 F-box family protein (.1) Lus10009424 [exp] 75 / 3e-15 AT3G06240 73 / 9e-14 F-box family protein (.1) Lus10027780 [exp] 70 / 1e-13 AT3G23880 60 / 6e-10 F-box and associated interaction domains-containing protein (.1) Lus10036360 [exp] 69 / 1e-13 AT4G04690 63 / 1e-11 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G006800 [exp] 56 / 1e-08 AT4G12560 100 / 4e-23 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012700 [exp] 53 / 7e-08 AT4G12560 143 / 3e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G154500 [exp] 52 / 1e-07 AT4G12560 139 / 7e-37 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318300 [exp] 51 / 4e-07 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.014G162600 [exp] 48 / 3e-06 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.002G223000 [exp] 47 / 5e-06 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.017G058000 [exp] 47 / 5e-06 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.011G121200 [exp] 47 / 5e-06 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G006900 [exp] 47 / 1e-05 AT4G12560 95 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013000 [exp] 46 / 2e-05 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011203 pacid=23147138 polypeptide=Lus10011203 locus=Lus10011203.g ID=Lus10011203.BGIv1.0 annot-version=v1.0 ATGGATGAGGCACCTAGTGGTGGGGGTATTTATATGTGCAATAGGTTGGTGCCGGCCGCCGGAGCAGGGGGTTGTATTTTCCGATGGAAAAGTTTGGTTT TGACTTTTCACAAAGATACAAAGCCGTCGGAGATGGCTAGACGGCAACCAAAAGCTGCCTCCTTCAATGGCTTCCAATCATCTAATGTATTGCTCGATTC CGCTGTGTCTGCCGCATGGCGGACTCTCCTCTCCGACCCCAATGTCATCCGCAAAATCCTCTTCCACAAATCCTCCGACGATGAGAAGAAATTGCGGGTC CTTATATTGGGAAATCGGAGCTCCACTTACAGTTCTCCGGTGATTCACTCTGCATGCTCGTACCAAACCCTCCGTCCAATCGAAGAATTGGTTACCCCGA TCGGTTTCGAAATTTCAAGAGTGGTAGGGTGCTGCAATGGCATATTCTGCTTAGCCAATACGACGAGGGATGTCAACGGAAACTACATTCACGACACGAT TCTATGGACCTCCGGAACCAAAATCATTCCTTCAGGTCCTTATCACCCTTCCCGTGTCTTCCTGGACCTTCGTCCAGAGCACATCGGTTTCGGGTACGAT CCCGAAACTGATGACTACAAAGTTGTCCGAGTGATGGAATGTGAAGAAAGCTCGACGGGTGATGATTATCTGGTCGGTTATGATCCTGCCCTGTTCTACC ATGGTCCTACTCTTATGTTCGCAGAGGTAACAACCCAAATTCTATCTGCTTCAGATTTCATCTATACTAGGTTGGTTGTTCGCGTTCCGCTGCGAAGCTG A
AA sequence Show only first row Show all	>Lus10011203 pacid=23147138 polypeptide=Lus10011203 locus=Lus10011203.g ID=Lus10011203.BGIv1.0 annot-version=v1.0 MDEAPSGGGIYMCNRLVPAAGAGGCIFRWKSLVLTFHKDTKPSEMARRQPKAASFNGFQSSNVLLDSAVSAAWRTLLSDPNVIRKILFHKSSDDEKKLRV LILGNRSSTYSSPVIHSACSYQTLRPIEELVTPIGFEISRVVGCCNGIFCLANTTRDVNGNYIHDTILWTSGTKIIPSGPYHPSRVFLDLRPEHIGFGYD PETDDYKVVRVMECEESSTGDDYLVGYDPALFYHGPTLMFAEVTTQILSASDFIYTRLVVRVPLRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011203 [exp]	0	1
AT3G05060			NOP56-like pre RNA processing ...		Lus10007265 [exp]	2.0	0.8353
AT3G50990			Peroxidase superfamily protein...		Lus10030940 [exp]	6.8	0.7790
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10020165 [exp]	8.7	0.7874
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10020085 [exp]	11.0	0.7714
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Lus10034217 [exp]	13.0	0.8458
					Lus10003493 [exp]	13.7	0.8430
AT1G49570			Peroxidase superfamily protein...		Lus10009901 [exp]	14.0	0.8541
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10018748 [exp]	24.0	0.7665
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10026966 [exp]	24.8	0.8240
AT5G61680			Pectin lyase-like superfamily ...		Lus10034893 [exp]	36.3	0.8048

Compare expression of checked genes

Lus10011203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.