Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02340 181 / 1e-54 alpha/beta-Hydrolases superfamily protein (.1) AT3G51000 180 / 3e-54 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 169 / 9e-50 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 160 / 1e-46 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 153 / 5e-44 ATSEH soluble epoxide hydrolase (.1) AT4G15955 146 / 2e-41 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G26750 145 / 3e-41 alpha/beta-Hydrolases superfamily protein (.1) AT4G12830 66 / 1e-11 alpha/beta-Hydrolases superfamily protein (.1) AT1G52510 53 / 1e-07 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G24160 51 / 6e-07 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011202 [exp] 406 / 4e-143 AT4G02340 206 / 1e-64 alpha/beta-Hydrolases superfamily protein (.1) Lus10001210 [exp] 358 / 4e-124 AT4G02340 189 / 5e-58 alpha/beta-Hydrolases superfamily protein (.1) Lus10005858 [exp] 353 / 3e-122 AT4G02340 192 / 3e-59 alpha/beta-Hydrolases superfamily protein (.1) Lus10036177 [exp] 347 / 1e-119 AT4G02340 203 / 3e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10039814 [exp] 345 / 8e-119 AT4G02340 216 / 3e-68 alpha/beta-Hydrolases superfamily protein (.1) Lus10018477 [exp] 341 / 2e-117 AT4G02340 181 / 6e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10038312 [exp] 341 / 2e-117 AT4G02340 202 / 4e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10008683 [exp] 187 / 3e-57 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 186 / 7e-57 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G048000 [exp] 436 / 1e-154 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134800 [exp] 352 / 7e-122 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134900 [exp] 343 / 2e-118 AT4G02340 209 / 8e-66 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G039700 [exp] 341 / 1e-117 AT3G51000 203 / 2e-63 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 193 / 2e-59 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127200 [exp] 185 / 2e-56 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 182 / 2e-55 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 167 / 2e-49 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 166 / 2e-48 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 161 / 5e-47 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10011204 pacid=23147101 polypeptide=Lus10011204 locus=Lus10011204.g ID=Lus10011204.BGIv1.0 annot-version=v1.0 ATGGATCGAATCCAGCACAGATTCCTCCAAGTCAACGGGCTGAATCTCCACTACTCCGAAGCCGGGTCGGGTGACAAGGTGGTGGTGTTCTTGCACGGAT TCCCAGATATATGGTACTCGTGGCGGCACCAGATGATTTCCGCCGCCAACTCGGGTTTCCGAGCCTTAGCACCCGATTACAGAGGGTACGGATTCTCCGA CCCGCCTCCCGAACCGGAACGGACCAAGTTCGTGGACTTGATCGACGATCTCCACGAAATGCTCAAGGCGTTAGGAATTTCTCAGTGTGTAGTCGTGGCA AAAGACTTCGGAGCCAGAGTGGCATATGTCTACGCCCTAAAACACCCGGAGAACGTCGCCGGAGTTGTAACGCTCGGGTCACCGTTCATGCCTCCCGGCG CAATAAAGTCCTGCGGCTACTTCCATGAAGGCACTTACATTTCGAGATGGCAGAAACCCGAGAGAGCAGAAGCGGACTTCGACCGGTTCGACTCGAAAAC CGTGGTCAGGAAGATATACATTCTGTTCTTCGGCCACGAAGTCCCGGTAGCGAATGAAGACCAGGAGATACTCGACTTGGTCGATTCGTCGGCTCCTCTC CCTTCTTGGTTTAGCGAGGAAGACCTTGCGGTGTATGGAGCTTCCTACCATAAGTCCGGGTTTCATACGGCTATGCAGATTCCTTACAGGTCGATATGGG AAGACATCGGGACCAAGGAGATGGTAATCAGGGTTCCGGCATTGCTGATAATCGGGGAGAAGGACTACGTATTGAAATTTCATGGAAGAGAAGAATTCGT GAAGAGCGGGAAGGCACGAGAATCTGTTCCTGATCTAGAAGTCGTGTATTTGCCCGAAGGAACCCATTTCGTGCAGGAACAGTTCCCCGAACGAGTTAAC CGGTTGATATGTGAGTTTCTCGGTTCCAGGATATGGCCATCTCGAAAACACTAA
AA sequence Show only first row Show all	>Lus10011204 pacid=23147101 polypeptide=Lus10011204 locus=Lus10011204.g ID=Lus10011204.BGIv1.0 annot-version=v1.0 MDRIQHRFLQVNGLNLHYSEAGSGDKVVVFLHGFPDIWYSWRHQMISAANSGFRALAPDYRGYGFSDPPPEPERTKFVDLIDDLHEMLKALGISQCVVVA KDFGARVAYVYALKHPENVAGVVTLGSPFMPPGAIKSCGYFHEGTYISRWQKPERAEADFDRFDSKTVVRKIYILFFGHEVPVANEDQEILDLVDSSAPL PSWFSEEDLAVYGASYHKSGFHTAMQIPYRSIWEDIGTKEMVIRVPALLIIGEKDYVLKFHGREEFVKSGKARESVPDLEVVYLPEGTHFVQEQFPERVN RLICEFLGSRIWPSRKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10011204 [exp]	0	1
AT2G23755			unknown protein		Lus10019660 [exp]	2.0	0.9624
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10035260 [exp]	6.9	0.9511
AT2G37050			Leucine-rich repeat protein ki...		Lus10019237 [exp]	10.3	0.9525
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Lus10031069 [exp]	11.5	0.9439
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10035301 [exp]	13.1	0.9391
AT2G36950			Heavy metal transport/detoxifi...		Lus10022617 [exp]	13.6	0.9497
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033365 [exp]	15.4	0.9475
AT4G17900			PLATZ transcription factor fam...		Lus10004577 [exp]	18.1	0.9474
AT2G23790			Protein of unknown function (D...		Lus10016799 [exp]	19.3	0.9488
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10042516 [exp]	21.3	0.9509

Compare expression of checked genes

Lus10011204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.