Plant FIBer expression Database

Lus10011205 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G61040 579 / 0 VIP5 vernalization independence 5, plus-3 domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018476
[exp]
880 / 0 AT1G61040 669 / 0.0 vernalization independence 5, plus-3 domain-containing protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G039500
[exp]
660 / 0 AT1G61040 694 / 0.0 vernalization independence 5, plus-3 domain-containing protein (.1)
Potri.011G047900
[exp]
656 / 0 AT1G61040 687 / 0.0 vernalization independence 5, plus-3 domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03126 Plus-3 Plus-3 domain
Representative CDS sequence
>Lus10011205 pacid=23147168 polypeptide=Lus10011205 locus=Lus10011205.g ID=Lus10011205.BGIv1.0 annot-version=v1.0
ATGGCAGACTTGGAACATTTGCTGCTGGAGGCAGCTGGAAGAACTGGCAATGGAGGAAGAAGCAGGAATTCACGACCGCCTTCCAGAAGGAGAGATGAGG
GTTCTGATTCGGATGGTGGAAGCGATTCTAGGGAGGACGATTCGGACGATGACCGTGGTGGAGGATATGCAAGCAGAAAGCCGTCCGGGTCTCAAGTCCC
ACTGAAGAAGAGGCTGGATGCTGGTGAAAAGGATGATGAACACGGCAGCCAGGAGGAAGACGGCGATTACGAAGATAGGGGATCTGATCGGGAACGTGGC
AGCAGTGACGAATCTGAGGTTGGTTCGGATCTTTATAAGGATGAGGACGATAGGAGGCACTTGGAGCAGATGTCCGAACTCGAGAGGGAAATGATATTGA
CGGAACGGGCAGACAAGAAAGGCGACAAGGATTTGACGGAGAGGATCCGGTCGAAACGTGAGAACAACAGCAACAACGAGAAGGCGAAGGGGAAGGTGGA
CCCTCCGCCTCCTCCCCAATCGTCTCGTGTTGTCCGATCCTCGACTCGGTCTGCTGACAGGGCGGCTGCGAAAGATGACGCGTTGAACGAGTTGCGAGCT
AAGAGACTGAAGCAAAAGGATCCGGAGGGTCACAGGAAGCTGAGAGAAGGTATTACGCCGCTCAAGCGGAAGAGTTTCGCTTCCGCTACTAGATTCAGCA
ACTCGAGTCAGAGCGAATCCGAGAGCGACGACGATGATGATTCGAACGGTGGAATGGAAGACAGCGACGACGAGCCTGGATCGAAGGGACCTTCGTACGA
AGACATTCGAGAAATCACGATCAAAAGATCGAAGCTTGTTAAATGGCTGATGGAGCCATGGTTCGATGAGCTCATAGTCGGTTGCTTCGTTCGAGTTGGG
ATCGGGATGTCGAGATCAGGACCGATATATAGGCTTTCGTTTGTTCGTAATGTTGATGCTGCTGATCCGGATCGTCCGTACAAGCTCGAGAACAAGACGA
CGTATAAATACTTGAACTGCGTATGGGGTAACGAGAACTCGGCTGCTCGATGGCAGATGGCGATGGTGTCCGATTCGGTGCCGACGGAGGAAGAGTACAG
GCTGTGGAAGAAGGAAGTGGAGAAGTCGAACGGCCGGTTGCCGAGCAGGCAAGAGATAATGGAGAAGAAGGAAGCGATTAAGAAGACTAATACTTATGTC
TACTCGGCCGCCACGGTGAAGCAGATGCTGCAAGAGAAGAAGTCTGCATCGACGAGACCGTTGAACGTTGCGGCTGAGAAGGACCGGCTGAGGAACGAGA
TGGAAGTGGCAATGAGCCGGAACAATCATTCCGAGGTGGAGAGGATTAAAGCGAGGATACAGGAACTCGAAGCGTCGAGACAGGGTCAAGAAGTGGATAA
GAAGGCGCTGAAGCTGGCCGAGATGAATAGAAGGAACCGGGTCGAGAATTTCCGAAACGCTTCAGGGCAGAAAGCGGCTAATACCGGGTTGAAAGCTGGG
GAAGCCGGGTACGATCCGTTCTCGAGGAGGTGGACTCGGTCAAGAAACTATTACGCTGCGCAGAAAGAAGGGGGCGGTGGGGACGGTAATGGCGCCCCGG
AATCAGCTGTTGAGAACGGGAATGGAACTGCTGCGACAGCAGCCGCCTTGCAGGCAGCTGCCGGTGCGGGGAAGCTGGTCGATACAATTGCTCCGGTCGA
TGTAGGGACGGAGACGAATACGTTGCATGACTTCGAGCTTCCGATCTCATTAGATGTGCTCGAATACTGGGGTGGTGCTAAAGGAGCTCAGGCCGGGTTC
TTGGCTAGGAAGCAGAGGATCGAAGCGAGTATGGGAGTTCGAGTTCCGGAGAATGATGGGAGACGGCATGCGTTGACTTTGACTGTTAGTGATTACAAGA
GAAGAAGAGGGCTTCTCTAA
AA sequence
>Lus10011205 pacid=23147168 polypeptide=Lus10011205 locus=Lus10011205.g ID=Lus10011205.BGIv1.0 annot-version=v1.0
MADLEHLLLEAAGRTGNGGRSRNSRPPSRRRDEGSDSDGGSDSREDDSDDDRGGGYASRKPSGSQVPLKKRLDAGEKDDEHGSQEEDGDYEDRGSDRERG
SSDESEVGSDLYKDEDDRRHLEQMSELEREMILTERADKKGDKDLTERIRSKRENNSNNEKAKGKVDPPPPPQSSRVVRSSTRSADRAAAKDDALNELRA
KRLKQKDPEGHRKLREGITPLKRKSFASATRFSNSSQSESESDDDDDSNGGMEDSDDEPGSKGPSYEDIREITIKRSKLVKWLMEPWFDELIVGCFVRVG
IGMSRSGPIYRLSFVRNVDAADPDRPYKLENKTTYKYLNCVWGNENSAARWQMAMVSDSVPTEEEYRLWKKEVEKSNGRLPSRQEIMEKKEAIKKTNTYV
YSAATVKQMLQEKKSASTRPLNVAAEKDRLRNEMEVAMSRNNHSEVERIKARIQELEASRQGQEVDKKALKLAEMNRRNRVENFRNASGQKAANTGLKAG
EAGYDPFSRRWTRSRNYYAAQKEGGGGDGNGAPESAVENGNGTAATAAALQAAAGAGKLVDTIAPVDVGTETNTLHDFELPISLDVLEYWGGAKGAQAGF
LARKQRIEASMGVRVPENDGRRHALTLTVSDYKRRRGLL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G61040 VIP5 vernalization independence 5, ... Lus10011205
[exp]
0 1
AT1G30480 DRT111 DNA-DAMAGE-REPAIR/TOLERATION P... Lus10023355
[exp]
2.6 0.8777
AT1G08700 PS1 Presenilin-1 (.1) Lus10020339
[exp]
8.0 0.8539
AT1G19440 KCS4 3-ketoacyl-CoA synthase 4 (.1) Lus10002533
[exp]
8.2 0.8766
AT5G58020 unknown protein Lus10036615
[exp]
9.4 0.8288
AT1G62830 ATLSD1, ATSWP1,... ARABIDOPSIS LYSINE-SPECIFIC HI... Lus10012283
[exp]
12.0 0.8149
AT3G05670 RING/U-box protein (.1) Lus10015213
[exp]
12.6 0.8293
AT2G28910 CXIP4 CAX interacting protein 4 (.1) Lus10040809
[exp]
12.7 0.8381
AT4G39820 Tetratricopeptide repeat (TPR)... Lus10016067
[exp]
13.6 0.8459
AT5G41670 6-phosphogluconate dehydrogena... Lus10032341
[exp]
15.7 0.8561
AT5G41020 MYB myb family transcription facto... Lus10041714
[exp]
16.6 0.8283

Lus10011205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.