Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61050 324 / 1e-106 alpha 1,4-glycosyltransferase family protein (.1) AT3G09020 284 / 2e-91 alpha 1,4-glycosyltransferase family protein (.1) AT5G01250 279 / 2e-89 alpha 1,4-glycosyltransferase family protein (.1) AT2G38150 271 / 9e-87 alpha 1,4-glycosyltransferase family protein (.1) AT2G38152 262 / 2e-83 alpha 1,4-glycosyltransferase family protein (.1) AT4G19900 107 / 2e-24 alpha 1,4-glycosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027770 [exp] 288 / 8e-93 AT5G01250 366 / 2e-124 alpha 1,4-glycosyltransferase family protein (.1) Lus10035526 [exp] 284 / 2e-91 AT5G01250 362 / 6e-123 alpha 1,4-glycosyltransferase family protein (.1) Lus10027772 [exp] 275 / 8e-88 AT2G38150 409 / 2e-141 alpha 1,4-glycosyltransferase family protein (.1) Lus10035525 [exp] 271 / 3e-86 AT2G38150 409 / 2e-141 alpha 1,4-glycosyltransferase family protein (.1) Lus10004828 [exp] 266 / 4e-84 AT2G38150 430 / 2e-149 alpha 1,4-glycosyltransferase family protein (.1) Lus10002496 [exp] 220 / 1e-66 AT2G38150 388 / 4e-133 alpha 1,4-glycosyltransferase family protein (.1) Lus10027771 [exp] 204 / 7e-57 AT2G38150 317 / 8e-97 alpha 1,4-glycosyltransferase family protein (.1) Lus10018315 [exp] 105 / 6e-24 AT4G19900 699 / 0.0 alpha 1,4-glycosyltransferase family protein (.1) Lus10017137 [exp] 102 / 1e-22 AT4G19900 693 / 0.0 alpha 1,4-glycosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G047700 [exp] 384 / 6e-130 AT1G61050 389 / 1e-132 alpha 1,4-glycosyltransferase family protein (.1) Potri.004G039300 [exp] 379 / 3e-128 AT1G61050 393 / 4e-134 alpha 1,4-glycosyltransferase family protein (.1) Potri.016G114200 [exp] 329 / 1e-108 AT3G09020 419 / 3e-145 alpha 1,4-glycosyltransferase family protein (.1) Potri.006G098900 [exp] 226 / 7e-72 AT2G38152 258 / 1e-85 alpha 1,4-glycosyltransferase family protein (.1) Potri.015G122200 [exp] 86 / 1e-17 AT4G19900 420 / 7e-138 alpha 1,4-glycosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04488 [flax] [poplar] Gly_transf_sug Glycosyltransferase sugar-binding region containing DXD motif CL0110 [flax] [poplar] PF04572 [flax] [poplar] Gb3_synth Alpha 1,4-glycosyltransferase conserved region
Representative CDS sequence Show only first row Show all	>Lus10011206 pacid=23147140 polypeptide=Lus10011206 locus=Lus10011206.g ID=Lus10011206.BGIv1.0 annot-version=v1.0 ATGACGGCTGTTTCTCGCTGGACGACTTACGAGTTCCTCCACCGCCATTTCCACTGTGTCAATAGATTCGTCCTCCTCTTCTTCCTGTTGTTGTTGTTGG TCTACAATGGCTCCTCTGTCTTCTACGTCCCCGTACCCTTTTTCCCTGCCAACCCACCCGCGGTGGTCACTCCCGCCAATTTCTCCGTCTCCATCGTTAG CGAGAAAATTCAAATGGAAACAAACCCGTCGACGGTAGGTGTGATTACGCGGTTTCAGGATCCGGTGGGTCTCGCGCTTTCTAGGCAGGGCCGGAAAGTT CAACTGGAAACGAAACTGCCGCCGACAGTGATGGCTGTGGAAGCGGCGCGTGTGGTGACGCGCTTTCAGGATCCGGTGGGGGCGACGCTTGTTGCTAGGG CTCAGAGTCGGAAAGGCCGGTCGGCGAAGGAGCTGGTGGCGAGAAAGATCCGGAGTTTCGAACCGGGTCCGCGACCCGGGTCACGAACAAGGACTTTCTC GACCCGGATCCGGGACTTCTTCGGATCCGACTGCAAGCCGCGATTCTTCATGACGGTCATCTCTTCCAGCGGAGCGGTGAATTCGTTCGGTGGTCGGGAG TCGTTCGCCGTGGAGAGCATATTCAGGTCTCATCAGAATGCATGCCTGGCGATCGTCTCCAATTCGTTGGACACTAAATCGGGGAGACGGATCCTGAAGC GGTTCACCGACCGGAAGTTCCGGGTTGCGGCGGTGAAGCCGGACTTCGCCGCGGTGTTTAAGGACACTCCGGCGGAATCGTGGTTCAAGGAGCTGAAGAA GGGGAACGTCCGGCCGGGGGAAGTCTCGTTGGGGCAGAACCTGTCGAACCTGCTCAGGTTGGCTCTGCTCTACAAATTCGGCGGAATATACGTGGACACG GACGTCGTCGTTTTGAAGAGCTTCGCGGGCCTTCGGAACTCGATCGGGGCCCAGACGGTCGATTCCGAGTCCGGAAAGTGGAGCCGGTTGAACAATGCAG TCCTGGTTTTCGACAGGAAGCACCCGCTCCTTTTGAAGTTTATCGAGGAGTTTACGAGGACGTTCAACGGGAACAAGTGGGGGCATAATGGTCCTTACAT GGTTTCCCGAGTGGTGTCGAGGGTGAGTGCGAGGAGGGAGGTTGGGTTTAAGTTTGCGGTTTTGCCTCCCTCGGCGTTTTACCCTGTCGATTGGAGCAGG ATACACGGGTTGTTTAGGGGTCCGCGGGACCGGCTCCACTCGAAATGGATAAGGGAGAAGGTTGGGCAGATTAAGAAGGAGAGTTATGCGGTTCATTTGT GGAATAGGCAGAGTAGAGATGTGAAGATTGAGGATGGGAGCGTTATTAGTCGTTTATTGGAGGATTGTTGTTGTAATTTGTGCCCCAATTCTTCTTCTTC TTCGAGTTTTAGAAGAAAAACTAGTTGA
AA sequence Show only first row Show all	>Lus10011206 pacid=23147140 polypeptide=Lus10011206 locus=Lus10011206.g ID=Lus10011206.BGIv1.0 annot-version=v1.0 MTAVSRWTTYEFLHRHFHCVNRFVLLFFLLLLLVYNGSSVFYVPVPFFPANPPAVVTPANFSVSIVSEKIQMETNPSTVGVITRFQDPVGLALSRQGRKV QLETKLPPTVMAVEAARVVTRFQDPVGATLVARAQSRKGRSAKELVARKIRSFEPGPRPGSRTRTFSTRIRDFFGSDCKPRFFMTVISSSGAVNSFGGRE SFAVESIFRSHQNACLAIVSNSLDTKSGRRILKRFTDRKFRVAAVKPDFAAVFKDTPAESWFKELKKGNVRPGEVSLGQNLSNLLRLALLYKFGGIYVDT DVVVLKSFAGLRNSIGAQTVDSESGKWSRLNNAVLVFDRKHPLLLKFIEEFTRTFNGNKWGHNGPYMVSRVVSRVSARREVGFKFAVLPPSAFYPVDWSR IHGLFRGPRDRLHSKWIREKVGQIKKESYAVHLWNRQSRDVKIEDGSVISRLLEDCCCNLCPNSSSSSSFRRKTS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61050			alpha 1,4-glycosyltransferase ...		Lus10011206 [exp]	0	1
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10001282 [exp]	3.0	0.9499
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10043142 [exp]	3.3	0.9430
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10039399 [exp]	4.2	0.9666
AT2G43870			Pectin lyase-like superfamily ...		Lus10002124 [exp]	5.1	0.9517
AT1G55210			Disease resistance-responsive ...		Lus10017228 [exp]	9.0	0.9445
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Lus10014569 [exp]	10.6	0.9315
AT3G05390			unknown protein		Lus10029907 [exp]	11.8	0.9474
AT1G72230			Cupredoxin superfamily protein...		Lus10027043 [exp]	13.0	0.9360
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031118 [exp]	15.1	0.9470
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10012901 [exp]	16.9	0.9473

Compare expression of checked genes

Lus10011206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.