Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21660 691 / 0 proline-rich spliceosome-associated (PSP) family protein (.1), proline-rich spliceosome-associated (PSP) family protein (.2) AT1G11520 145 / 3e-40 pliceosome associated protein-related (.1) AT1G67210 43 / 0.0004 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1), Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018475 [exp] 842 / 0 AT4G21660 756 / 0.0 proline-rich spliceosome-associated (PSP) family protein (.1), proline-rich spliceosome-associated (PSP) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G047600 [exp] 745 / 0 AT4G21660 737 / 0.0 proline-rich spliceosome-associated (PSP) family protein (.1), proline-rich spliceosome-associated (PSP) family protein (.2) Potri.004G039000 [exp] 739 / 0 AT4G21660 740 / 0.0 proline-rich spliceosome-associated (PSP) family protein (.1), proline-rich spliceosome-associated (PSP) family protein (.2) Potri.004G104400 [exp] 44 / 0.0003 AT5G38600 404 / 3e-134 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1) Potri.017G111300 [exp] 44 / 0.0004 AT5G38600 400 / 4e-133 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04037 [flax] [poplar] DUF382 Domain of unknown function (DUF382) PF04046 [flax] [poplar] PSP PSP
Representative CDS sequence Show only first row Show all	>Lus10011207 pacid=23147177 polypeptide=Lus10011207 locus=Lus10011207.g ID=Lus10011207.BGIv1.0 annot-version=v1.0 ATGGTGGCGGAGATTCTGCCGCACCAGAACGGCAGCATGTTGTCCAACGGCGGAAGCGGTGTGGCCGCCAACGGAGATCTGAGCAGCGCAAACCCTAGCT CAACCGCTTCCGGCAAGAAGGCGAGAGAGAGCGAGCGTCGCCGGCGTAGGCGCAAGCAGAAGAAGAGCAAGTCTGCTTCTAAGGTCGCCAATGATGACGA CAGCGACGCCGATGAGGCTAAGGAGAACGCCGATCCTCAAAAGGATCTGGAGAAAGTGGAAATTGAATATGTGCCGGAGAAGCCAGAGCTGGAAGATGGC ATGGATGATTTCAGAACGGTTTTTGAGAAGTTCAGCTTTGTCGAAGGCTCAGCTGCTGAGGACACGGAGAAGAAAGATGAAGCAGCAGAGAATGTCGAGT CTAAGAAGAAGGCTGACTCAGATTCTGATGAGGATGAGCAAGAAAATGGACAGAAGGATAAGGGAGGGATGTCAAACAAGAAGAAGAAACTTCTACGAAG AATGAAGATCGCTGAGCTTAAGCAGAAGTGCTCCAGACCTGATGTGGTTGAGGTGTGGGATGCTACTGCTTCAGATCCAAAGTTGCTTGTATTCTTAAAG GCCTACAGAAATTCTGTTCCAGTACCAAGACACTGGTGTCAGAAACGCAAATATCTTCAGGGTAAGCGTGGAATTGAGAAGCAACCTTTCCAGTTGCCTG ATTTTATTGCTGCAACGGGAATTGAAAAGATCCGCCAGGCATATATTGAGAAGGAGGACAGTAAGAAATTGAAGCAGAAGCAACGAGAGAGGATGCAACC TAAGATGGGCAAGATGGACATTGATTATCAGGTTCTTCATGATGCCTTTTTCAAGTACCAAACAAAACCAAAGTTGTCAAGTCATGGAGACTTGTACCAC GAAGGGAAGGAGTTTGAGGTGAAACTCAGGGAGATGAAACCAGGGAGTCTTTCGCAAGAACTAAAAGAAGCACTCGGTATGCCTGAAGGTGCCCCCCCTC CTTGGCTTATCAACATGCAGAGATATGGCCCTCCGCCATCATATCCTCATTTGAAGATTCCTGGACTCAATGCTCCGATTCCTTCTGGAGCCAGCTTTGG TTATCACCCTGGTGGCTGGGGCAAGCCTCCAGTTGATGAATATGGGCGGCCGCTGTACGGAGATGTTTTCGGAGTCCAACAACAAGAACAACCTACCTAT GATGAGGAGCCAGTTGATAAGAGTAAGCATTGGGGTGACTTGGAAGAAGAAGAGGAAGAAGAAGAGGAGGAGGAGGAGGAAGAAGATGAAGAGATGGAAG AAGAGGAACTCGAGGATGGCATCGAATCCGTCGACAGTCTTTCCACTACGCCAACCGGTGTCGAGACACCTGATGTTATCGACCTCCGTAAACAGCAGAG GAAGGAGCCCGATAGACCTCTCTACCAAGTTCTTGAACAAAAGGAGGAGAGTGTTGCTGCTGGAACTTTGCTTGGAACAACTCATACGTATACAATCGCT GGTTCCGGTGTTGCCCAAGACAAGTCGGGTGCTAAAAGGGTGGATCTGTTGAAGGGCCACAAAGCTGACAGAGTCGATGTCAGCTTACAACCTGAAGAAC TGGAAGCTATGGATAATGTCCTCCCTGCCTTAGCTCGAATTTGTGACCATGATATCTGGCGTTTTTTAACGTACGAGGAAGCGAGGGAGGAAGAGAAGTT ACGAAGCCAACGTGAGGACTTCAGCGACATGGTTGCAGAGAATGAAAAGAAGAGGAAGCGCAAGATGCAAGACAAGGACGGGAAATCGAAGAAGAAAGAC TTCAAGTTCTAG
AA sequence Show only first row Show all	>Lus10011207 pacid=23147177 polypeptide=Lus10011207 locus=Lus10011207.g ID=Lus10011207.BGIv1.0 annot-version=v1.0 MVAEILPHQNGSMLSNGGSGVAANGDLSSANPSSTASGKKARESERRRRRRKQKKSKSASKVANDDDSDADEAKENADPQKDLEKVEIEYVPEKPELEDG MDDFRTVFEKFSFVEGSAAEDTEKKDEAAENVESKKKADSDSDEDEQENGQKDKGGMSNKKKKLLRRMKIAELKQKCSRPDVVEVWDATASDPKLLVFLK AYRNSVPVPRHWCQKRKYLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLSSHGDLYH EGKEFEVKLREMKPGSLSQELKEALGMPEGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPSGASFGYHPGGWGKPPVDEYGRPLYGDVFGVQQQEQPTY DEEPVDKSKHWGDLEEEEEEEEEEEEEEDEEMEEEELEDGIESVDSLSTTPTGVETPDVIDLRKQQRKEPDRPLYQVLEQKEESVAAGTLLGTTHTYTIA GSGVAQDKSGAKRVDLLKGHKADRVDVSLQPEELEAMDNVLPALARICDHDIWRFLTYEEAREEEKLRSQREDFSDMVAENEKKRKRKMQDKDGKSKKKD FKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21660			proline-rich spliceosome-assoc...		Lus10011207 [exp]	0	1
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10022981 [exp]	2.4	0.8561
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Lus10036234 [exp]	3.2	0.8608
AT2G17510		EMB2763	EMBRYO DEFECTIVE 2763, ribonuc...		Lus10029500 [exp]	6.9	0.8923
AT1G07470			Transcription factor IIA, alph...		Lus10016503 [exp]	8.3	0.8196
AT4G25120		ATSRS2	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10016712 [exp]	12.3	0.8550
AT3G49600		SUP32, ATUBP26,...	ubiquitin-specific protease 26...		Lus10042726 [exp]	15.9	0.8504
AT3G21290			dentin sialophosphoprotein-rel...		Lus10037611 [exp]	15.9	0.8078
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024063 [exp]	18.3	0.8192
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Lus10000866 [exp]	21.0	0.8165
AT5G51540			Zincin-like metalloproteases f...		Lus10031136 [exp]	21.4	0.8253

Compare expression of checked genes

Lus10011207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.