Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61065 119 / 2e-34 Protein of unknown function (DUF1218) (.1) AT3G15480 116 / 1e-33 Protein of unknown function (DUF1218) (.1) AT4G27435 111 / 1e-31 Protein of unknown function (DUF1218) (.1) AT1G52910 111 / 2e-31 Protein of unknown function (DUF1218) (.1) AT1G13380 94 / 1e-24 Protein of unknown function (DUF1218) (.1) AT1G68220 59 / 5e-11 Protein of unknown function (DUF1218) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018474 [exp] 173 / 1e-55 AT1G61065 219 / 2e-73 Protein of unknown function (DUF1218) (.1) Lus10032662 [exp] 130 / 1e-38 AT3G15480 256 / 3e-88 Protein of unknown function (DUF1218) (.1) Lus10043091 [exp] 129 / 3e-38 AT3G15480 258 / 7e-89 Protein of unknown function (DUF1218) (.1) Lus10034324 [exp] 92 / 7e-24 AT1G13380 275 / 2e-95 Protein of unknown function (DUF1218) (.1) Lus10041447 [exp] 91 / 2e-23 AT1G13380 273 / 1e-94 Protein of unknown function (DUF1218) (.1) Lus10043484 [exp] 74 / 8e-17 AT1G68220 276 / 2e-95 Protein of unknown function (DUF1218) (.1) Lus10034105 [exp] 72 / 3e-15 AT1G31860 367 / 1e-125 HISTIDINE BIOSYNTHESIS 2, histidine biosynthesis bifunctional protein (HISIE) (.1) Lus10032663 [exp] 62 / 2e-12 AT4G27435 103 / 4e-28 Protein of unknown function (DUF1218) (.1) Lus10010077 [exp] 41 / 0.0001 AT5G17210 263 / 8e-90 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G122700 [exp] 129 / 1e-38 AT4G27435 213 / 3e-71 Protein of unknown function (DUF1218) (.1) Potri.001G403600 [exp] 122 / 1e-35 AT4G27435 218 / 3e-73 Protein of unknown function (DUF1218) (.1) Potri.004G038700 [exp] 99 / 1e-26 AT1G61065 205 / 6e-68 Protein of unknown function (DUF1218) (.1) Potri.010G124800 [exp] 96 / 1e-25 AT1G13380 208 / 6e-69 Protein of unknown function (DUF1218) (.1) Potri.008G120900 [exp] 94 / 2e-24 AT1G13380 200 / 9e-66 Protein of unknown function (DUF1218) (.1) Potri.010G120500 [exp] 68 / 1e-14 AT1G68220 284 / 2e-98 Protein of unknown function (DUF1218) (.1) Potri.008G124100 [exp] 66 / 6e-14 AT1G68220 273 / 3e-94 Protein of unknown function (DUF1218) (.1) Potri.001G403500 [exp] 54 / 3e-09 AT3G15480 106 / 3e-29 Protein of unknown function (DUF1218) (.1) Potri.019G048300 [exp] 40 / 0.0003 AT5G17210 188 / 1e-60 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [flax] [poplar] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Lus10011208 pacid=23147109 polypeptide=Lus10011208 locus=Lus10011208.g ID=Lus10011208.BGIv1.0 annot-version=v1.0 ATGGCGTCGACGCTGGTGATCGTGGCGGTGTTCGTCCTTGATCTGATCGCCTTCTCCCTCGCCGTCGCCGCCGAACAAAGAAGAAACACCGGGTCGCTGC AAGCTGACGAGAACAACAATGGGTTCTGTATGTACGACTCGGACATAGCGACCGGGTTAGGGGTCGGTTCATTGGTTACTCTGATGACGAGTCAACTCTT GATCATGGGAGTGACTCGGTGCCTGTGTTGTGGGCGAGCTATGCGGCCTAGTGGGCCCAGATCTTGGGCCATTGTCTTGTTCATCACAAGCTGTTTGGTG GTTATGTTGGTTACTACGATTATGATCCTTTCAACTTCTACCGCGAACGAAGTGTTTGAATTGGTCACCGTCCCCCAACCCGCCGGACTTCCACGTCCCG ACGAGGTTGACCCAACCGTTTCTCCGAACACAACAACCATTGGTGGATCGTGTCGTGTTTCGTGTTGA
AA sequence Show only first row Show all	>Lus10011208 pacid=23147109 polypeptide=Lus10011208 locus=Lus10011208.g ID=Lus10011208.BGIv1.0 annot-version=v1.0 MASTLVIVAVFVLDLIAFSLAVAAEQRRNTGSLQADENNNGFCMYDSDIATGLGVGSLVTLMTSQLLIMGVTRCLCCGRAMRPSGPRSWAIVLFITSCLV VMLVTTIMILSTSTANEVFELVTVPQPAGLPRPDEVDPTVSPNTTTIGGSCRVSC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61065			Protein of unknown function (D...		Lus10011208 [exp]	0	1
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Lus10028438 [exp]	1.4	0.8221
AT2G39920			HAD superfamily, subfamily III...		Lus10002714 [exp]	4.2	0.8217
AT1G78280			transferases, transferring gly...		Lus10010350 [exp]	4.8	0.8242
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10027666 [exp]	5.9	0.7897
AT3G52760			Integral membrane Yip1 family ...		Lus10022723 [exp]	7.2	0.7522
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003623 [exp]	8.1	0.7909
AT2G39920			HAD superfamily, subfamily III...		Lus10040231 [exp]	9.5	0.7695
AT4G38810			Calcium-binding EF-hand family...		Lus10012178 [exp]	11.0	0.7795
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10032887 [exp]	11.1	0.8132
AT3G12620			Protein phosphatase 2C family ...		Lus10040346 [exp]	13.7	0.7591

Compare expression of checked genes

Lus10011208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.