Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04980 330 / 3e-98 unknown protein AT1G11070 310 / 6e-92 unknown protein AT1G61080 292 / 2e-84 Hydroxyproline-rich glycoprotein family protein (.1) AT1G07120 77 / 1e-14 unknown protein AT3G25690 77 / 3e-14 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) AT4G18570 77 / 4e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G48280 66 / 1e-10 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018473 [exp] 654 / 0 AT4G04980 347 / 1e-104 unknown protein Lus10038307 [exp] 477 / 2e-153 AT1G11070 330 / 2e-99 unknown protein Lus10036174 [exp] 327 / 1e-105 AT4G04980 236 / 6e-73 unknown protein Lus10031636 [exp] 279 / 2e-81 AT4G04980 313 / 3e-95 unknown protein Lus10033704 [exp] 277 / 1e-80 AT4G04980 311 / 4e-94 unknown protein Lus10036173 [exp] 270 / 1e-79 AT4G04980 96 / 2e-20 unknown protein Lus10025419 [exp] 79 / 1e-14 AT4G18570 565 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015292 [exp] 78 / 2e-14 AT4G18570 568 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034264 [exp] 77 / 4e-14 AT3G25690 1230 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G038400 [exp] 406 / 5e-127 AT4G04980 387 / 4e-121 unknown protein Potri.011G047100 [exp] 407 / 6e-127 AT4G04980 358 / 1e-109 unknown protein Potri.001G317001 [exp] 311 / 1e-93 AT4G04980 320 / 5e-98 unknown protein Potri.001G460300 [exp] 74 / 6e-13 AT3G25690 345 / 3e-106 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.010G130800 [exp] 72 / 1e-12 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.001G279000 [exp] 71 / 2e-12 AT1G07120 440 / 2e-153 unknown protein Potri.009G073600 [exp] 69 / 8e-12 AT1G07120 434 / 4e-151 unknown protein Potri.011G156500 [exp] 69 / 2e-11 AT3G25690 338 / 2e-103 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.011G064500 [exp] 68 / 3e-11 AT4G18570 432 / 2e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G054900 [exp] 67 / 4e-11 AT4G18570 420 / 1e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011209 pacid=23147100 polypeptide=Lus10011209 locus=Lus10011209.g ID=Lus10011209.BGIv1.0 annot-version=v1.0 ATGTCGAATACCCTCCAACTGGAAGAAGAAATTAAAAGAGAAGATCATCATCAACACGAAGAGGAGGGGGGAGGAGAAGAAGAAGAGGAAGGAGAAGAGG AGGAGAATCGACACGAATACGACAAAGACATTGTCGTTCCGACAGAAGAACATAACGATCACATCTTCGACCGAAGGGCTTTTCATATAAAAAAGGCTGC TCTGCACCTCCGTAACCTTCTTGGCAACCTCGCCAGAACAAGGCCCCGAGCTCCAACAATGCCAAATGGGACCTTATGTGGGTTGAGGCCATTTCTATTG GGACGCAAGGCATTTAGAGATGAGGGAGGAAGAGGGCATTCAAGCAGCAAGAGGGAGAAGTACAGGGTCACGAGGCCGAAAAATATGGTGCGAACAAAAG GCGGATCGACGGGGTTGTTCATCCTGATGATGGACCTGAGAAAGAAGATTATACTCTTCAGGGACGCATTTGAGCTGCCACCTTGTGATGAATCTGCTTC CATTAATGAACTTGTGATGGAAACCATGTTGGACCTCCATAATCTGTACCCTGAAATCATGCCCATCAAGGATTTATCAGAGATAAAAGAAGAAGCATCG ATTCACGAGATTCTGATTTACTTGTGTGGAGCACTGAGATCCGTTGGAGATTCATGGGTGAAGAATCATGAGTGGATGGACAAGACTACATTATACAGAC AGAACAACAAGGATGAATTAAATTCGGAACAACTAGTTGAGCTTTCGTTGGCAACACTCAATTGCTTGATTAAGATTCCAAAGGAGAAGTCTGACACGAC TGAAGAACAAGATGAAGAAGAAGATGATGATGATGATGAGAAAGAAGCCGTACCTGACGAGAAACTATTTGTGAGGTCTTACTCAGAGAGCAAGGCCAGT AAGCCGTTTAGTGCTTCCCCAGAAACACCAACGTCAGTTCTCCACGGGTTAACGTGCCCCGCTGATTCTCCCAAGGCACGGGAGTTTTCGAACTTGTATT GCTCGACGCCACTTCTGAGGTTTCTGAGCGTTGACGCAGTAGGGAAACTGAACCACATTGACATCAAGCGGCTTTCTTTCCAATTGTTTCCCCCCCCCGG CCACCACAAGAACAGTGAGGACAAAATTGTGGAGACCAAACCCTGCAGCGAAAAAGATGAGAATGATGAAGATTCCAGTAAAGACAATGGAACTACAGAG TCTGAAATGGTTCCACCTGTTCCATTGCCAACTCCATCACTAGCTCCACCTCCGCCTGCACCCCCACCACTGTGGATGAAGGTAGGTTCAGAACCACCGC TACCTCCTCCATTTCCACGATTGGCAACGTCGGAGAAGAGTGTGGTTCCACAACCTCCGCTACCGCCTCCATTTTCCAGTGGAGGATTGTCTTCATCGCA GCCAAATGTAATGGTTCCGGAAGATCCTCCATTGCCTCCTACTGTTTTAAAGTCTCAAGCTGCTACTATAAGTACATCACTGCCTATTCCACCCCCGCCA CCACCTCTACTGGCATCAGTGCAGCTTTCACCACCACCACCGTCTCTATCTGTACAAAAACCTCAGCAAGACATGCCACCTTCACAGCCACCACCACCAC CACAGATGGCATTACACGGGGAGCAACAATCGTCCTCATCGTCACAGCCTGCGCCAATTACCGTACAACAAGGAGCACCAACACCACCTCTACCACCAAG GCCATCTTCAAATGCACTTGCTCCGCCACCTCCCCCGCCAGGGTCATCTTCAAATGGACTCGCTCCGCCACCTCCGCCACCAGGGCCATCTTCAAATGGA CTTGGTCCACCACCTCCGCCACCAGGGCAATCTTCAAATGGACTGGCTCCGCCACCTCCGCCACCAGGACCATCTTCAAATGGACCGGCTCTGCCACCTC CTCCACCAGGGCCATCTTCGAATGGACCAGCTCCGCCACCTCCACCACCAGGGCCATCTTCGAATGGACCGGCTCCGCCACCTCCGCAACCAGGGTCATC TTCAAAAGGCTCGGCTCCGCCACCTCCGCCACCACCAGGGTCATCTTCAAATGGACCAGGTCCGCCACCTCCCTTACCATCCAGAAATGGAGCAGGACCT CCACCTCCTCCCCCAGGTGCAGGGAAGATGCTGCGGCCAAGGAAAGGGAAAAGCAAATTGAAGAGGTCAAGCCAAATGGGGAATTTGTACAGGACATTGA AGGGTAAGGTAGAAGGAGGTAATCAGACGAGAGTGAAGGGTGGAAGAGCAAGCCCGAATTCTGGAAATAACAATGGCGGGAAGCAAGGGATGGCTGATGC ACTAGCAGAGATAACAAAGAGATCAGCATACTTCCAACAGATTGAAGAGGATGTGAAAACCTATGCAAACGACATAGCAAAGTTAAAAACTGAAATTAGC AGTTTCAAAACAAAGGATATGACAGAATTGGTCAACTTCTACCATCATGTTGAGTCGATTCTCGAGAACCTGACAGATGAATCACAGGTCCTCGCAAGGT TCGAAGGTTTCCCACAAAAGAAATTGGAAGCAATAAGGGCATCAGCATCACTCTTCTGCAAGTTAAAGGGGATAGTCACTGACCTACAGACATGGAAGAT GGAACCCCCGTTGGATGCACTTCTCGACAGGACCGAACGATATGTCAACAAGATGAAGGGAGATTTGGATGCATTCGAGAGAAACAAAGACGATGAATGC AAGAAATTCAAGAGCCACAACATCGAATTCGACCTGCAGATCCTAGTACAGATCAAGGAAGCCGTGGTGGATCTTTCCTCCAATTGCATGGAATTGGCTC TCAAGGAAAGGAAAGAAGCTTCAAACAATGGAGCTCCACCAAGCAAGCCAACTTGTAAGACGCTGTGGAGAGCCTTCCAGTTTGCTTTCAGAGTGTACAC TTTCGCCGGCGGACACGACGATCGCGCCGATAAACTGACGCTAGAATTGGCTAAACAAATAGAGGAAGATCACCATCTAATGCAGGAAAAACCACCGTAG
AA sequence Show only first row Show all	>Lus10011209 pacid=23147100 polypeptide=Lus10011209 locus=Lus10011209.g ID=Lus10011209.BGIv1.0 annot-version=v1.0 MSNTLQLEEEIKREDHHQHEEEGGGEEEEEGEEEENRHEYDKDIVVPTEEHNDHIFDRRAFHIKKAALHLRNLLGNLARTRPRAPTMPNGTLCGLRPFLL GRKAFRDEGGRGHSSSKREKYRVTRPKNMVRTKGGSTGLFILMMDLRKKIILFRDAFELPPCDESASINELVMETMLDLHNLYPEIMPIKDLSEIKEEAS IHEILIYLCGALRSVGDSWVKNHEWMDKTTLYRQNNKDELNSEQLVELSLATLNCLIKIPKEKSDTTEEQDEEEDDDDDEKEAVPDEKLFVRSYSESKAS KPFSASPETPTSVLHGLTCPADSPKAREFSNLYCSTPLLRFLSVDAVGKLNHIDIKRLSFQLFPPPGHHKNSEDKIVETKPCSEKDENDEDSSKDNGTTE SEMVPPVPLPTPSLAPPPPAPPPLWMKVGSEPPLPPPFPRLATSEKSVVPQPPLPPPFSSGGLSSSQPNVMVPEDPPLPPTVLKSQAATISTSLPIPPPP PPLLASVQLSPPPPSLSVQKPQQDMPPSQPPPPPQMALHGEQQSSSSSQPAPITVQQGAPTPPLPPRPSSNALAPPPPPPGSSSNGLAPPPPPPGPSSNG LGPPPPPPGQSSNGLAPPPPPPGPSSNGPALPPPPPGPSSNGPAPPPPPPGPSSNGPAPPPPQPGSSSKGSAPPPPPPPGSSSNGPGPPPPLPSRNGAGP PPPPPGAGKMLRPRKGKSKLKRSSQMGNLYRTLKGKVEGGNQTRVKGGRASPNSGNNNGGKQGMADALAEITKRSAYFQQIEEDVKTYANDIAKLKTEIS SFKTKDMTELVNFYHHVESILENLTDESQVLARFEGFPQKKLEAIRASASLFCKLKGIVTDLQTWKMEPPLDALLDRTERYVNKMKGDLDAFERNKDDEC KKFKSHNIEFDLQILVQIKEAVVDLSSNCMELALKERKEASNNGAPPSKPTCKTLWRAFQFAFRVYTFAGGHDDRADKLTLELAKQIEEDHHLMQEKPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04980			unknown protein		Lus10011209 [exp]	0	1
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10032098 [exp]	12.2	0.9114
AT5G65005			Polynucleotidyl transferase, r...		Lus10041342 [exp]	18.1	0.8985
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014359 [exp]	23.6	0.8958
AT3G60670			PLATZ transcription factor fam...		Lus10015881 [exp]	29.3	0.8886
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014528 [exp]	32.2	0.8922
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010693 [exp]	41.6	0.8875
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10009234 [exp]	41.7	0.8860
AT1G09200			Histone superfamily protein (....		Lus10005270 [exp]	42.0	0.8868
AT1G80850			DNA glycosylase superfamily pr...		Lus10002310 [exp]	45.4	0.8296
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10043211 [exp]	49.0	0.8852

Compare expression of checked genes

Lus10011209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.