Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32420 83 / 2e-17 F-box and associated interaction domains-containing protein (.1) AT1G47790 68 / 4e-12 F-box and associated interaction domains-containing protein (.1) AT5G62660 64 / 6e-11 F-box and associated interaction domains-containing protein (.1) AT3G04660 63 / 2e-10 F-box and associated interaction domains-containing protein (.1) AT1G33530 62 / 5e-10 F-box family protein (.1) AT2G02030 61 / 6e-10 F-box family protein (.1) AT5G52610 60 / 1e-09 F-box and associated interaction domains-containing protein (.1) AT1G12855 60 / 2e-09 F-box family protein (.1) AT2G15640 59 / 3e-09 F-box family protein (.1) AT4G38870 59 / 5e-09 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013934 [exp] 437 / 9e-151 AT1G11270 72 / 7e-14 F-box and associated interaction domains-containing protein (.1.2.3) Lus10007285 [exp] 400 / 2e-136 AT3G04660 82 / 7e-17 F-box and associated interaction domains-containing protein (.1) Lus10011190 [exp] 403 / 5e-136 AT1G32420 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) Lus10007277 [exp] 399 / 8e-136 AT3G04660 82 / 6e-17 F-box and associated interaction domains-containing protein (.1) Lus10016866 [exp] 404 / 7e-135 AT1G32420 84 / 2e-17 F-box and associated interaction domains-containing protein (.1) Lus10011197 [exp] 353 / 1e-116 AT1G47790 86 / 6e-18 F-box and associated interaction domains-containing protein (.1) Lus10018460 [exp] 337 / 1e-112 AT1G32420 66 / 9e-12 F-box and associated interaction domains-containing protein (.1) Lus10022939 [exp] 315 / 2e-104 AT1G52490 56 / 2e-08 unknown protein Lus10022937 [exp] 314 / 4e-104 AT1G52490 56 / 2e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G458400 [exp] 85 / 1e-17 AT2G31470 113 / 8e-28 DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) Potri.002G223000 [exp] 77 / 7e-15 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.014G162600 [exp] 77 / 7e-15 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.008G144000 [exp] 76 / 2e-14 AT4G38870 97 / 6e-22 F-box and associated interaction domains-containing protein (.1) Potri.007G074084 [exp] 74 / 6e-14 AT1G11270 83 / 1e-17 F-box and associated interaction domains-containing protein (.1.2.3) Potri.019G062900 [exp] 71 / 6e-13 AT1G50870 69 / 1e-12 F-box and associated interaction domains-containing protein (.1) Potri.006G013000 [exp] 68 / 3e-12 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.013G093100 [exp] 67 / 9e-12 AT1G50870 80 / 2e-16 F-box and associated interaction domains-containing protein (.1) Potri.001G318300 [exp] 64 / 9e-11 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.010G149000 [exp] 62 / 3e-10 AT5G49610 528 / 0.0 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF08268 [flax] [poplar] FBA_3 F-box associated domain CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10011210 pacid=23147135 polypeptide=Lus10011210 locus=Lus10011210.g ID=Lus10011210.BGIv1.0 annot-version=v1.0 ATGATTTTAGTCATCAAGGGTTTTCTCGTAGGAGGCGGCGGCGGCGATTTGAGAGACAGGGGAGGAAGAACCGAGCCACCGATAGGAGGTGGTGGTCGGA AGATAAAAGCTCCGGCGGCGGGAGCTTTTGGCGGAATTCCCGGCGGGAAACCTCATGTTTACCAGAAGAAGTGGAAGGAGCAGACGACAAATAAGAACGA TTTTCATGATGATCTGGTGGCTACCCAGATACTTAGCAGACTCCCAGCCAAGTCACTTATGCGGTTCAAGTCAGCCTGTAAAGGTTGGAAAGCGATCATC GAAAAAGATTCACACTTTATCAATTTACACCGCACCCGTTCACAAGCACGCCCCCCTCGTTTGATGACTGTCGTCCACAATATCAAAGACAACGACGAAA CTAGAGGTTTTTTTGATTTATTGTCAGCCGATCTGGACTGTGACAGTGGTGATGGTGACAGTGATGTCAAAGCGGCCAGTATTCGAAGCGTAATGAGCGT GAGAGCGCCAAATCCAACTATTGACGTTATGGGACCTGTTAGGGGATTGGCCTGTTTCGCTGACCTTGGCAACTTTGAGGTACTGATTTACAATGTCAGC ACTCGACAAGCTGTCACATCATGGATCAGATCGACTGTGAGTCAAAAGTACTCTTACTCGGACGAACCGGTATGTCAATTTGGATACGATTCCGATACTG GAGAACATAAAGTTATTTTCGTGTGGCATGATCCATCAGGACCAGCTAAAACTCTTCGTCCAGTAGCTTGTGAGGTGTTGACTGTAGGGGTTGACACTAG TTGGAGAATAATTGATGATACACCTCCTACACGTGAATTCATCGGATATATTGCTACTTATGCCAACGGTTCCATCTATTGGATGTTGTCTGACAAGGGT TCTGAATATTTACTGGCATTTGACATTGGATCCGAGAAGTTTAGGACGATCATAATCCCCGAATTCACACTTTTAGGGTGTCGATCGTTGCCCTACTGTA ATTTAATTGAACTGGATGGGTGTCTAACCTTGGTGCGTATCTGCAGAGAGCGAACACAGAGGTTGTGGAAATTGTGTGATCGTAATAAGAATGGAACATC TAATAGTACGACTGTTAGCAGAAGTGAAAGAGAAGATTGGAGTGAAGTTCGTATTGAAGTACCTTGTAATGTCACACCCTCGGACACTGCATTTCATCCG TTACCTGGAAAAGACCTGATTATCCTGGAAACTTATGATCAACGGGATTCAGACGACTTTCAGAGGAATGTGGAGCTTGCCTCCTTTTACTGTTACAACC GGATAAACAAGACTGTCAGCAAGTTTGAAATCCAAGGAATTCCCTCTCTTCCGGACAAGTCCAGAACTTATTGTAAAGTTTTGGTAGAAGATGATCTTTT CTCTGCTGCTGAGAAAAAACCAGTGAAGAACCCGAGTTGA
AA sequence Show only first row Show all	>Lus10011210 pacid=23147135 polypeptide=Lus10011210 locus=Lus10011210.g ID=Lus10011210.BGIv1.0 annot-version=v1.0 MILVIKGFLVGGGGGDLRDRGGRTEPPIGGGGRKIKAPAAGAFGGIPGGKPHVYQKKWKEQTTNKNDFHDDLVATQILSRLPAKSLMRFKSACKGWKAII EKDSHFINLHRTRSQARPPRLMTVVHNIKDNDETRGFFDLLSADLDCDSGDGDSDVKAASIRSVMSVRAPNPTIDVMGPVRGLACFADLGNFEVLIYNVS TRQAVTSWIRSTVSQKYSYSDEPVCQFGYDSDTGEHKVIFVWHDPSGPAKTLRPVACEVLTVGVDTSWRIIDDTPPTREFIGYIATYANGSIYWMLSDKG SEYLLAFDIGSEKFRTIIIPEFTLLGCRSLPYCNLIELDGCLTLVRICRERTQRLWKLCDRNKNGTSNSTTVSRSEREDWSEVRIEVPCNVTPSDTAFHP LPGKDLIILETYDQRDSDDFQRNVELASFYCYNRINKTVSKFEIQGIPSLPDKSRTYCKVLVEDDLFSAAEKKPVKNPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32420			F-box and associated interacti...		Lus10011210 [exp]	0	1
AT3G13810	C2H2ZnF	ATIDD11	indeterminate(ID)-domain 11 (....		Lus10008396 [exp]	14.1	0.6819
					Lus10018952 [exp]	14.9	0.7642
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10031114 [exp]	16.7	0.7304
AT3G15000			cobalt ion binding (.1)		Lus10014696 [exp]	29.4	0.7008
AT4G21520			Transducin/WD40 repeat-like su...		Lus10002602 [exp]	35.2	0.6639
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10013966 [exp]	44.2	0.6830
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Lus10001290 [exp]	68.9	0.6655
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10040775 [exp]	149.7	0.6214

Compare expression of checked genes

Lus10011210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.