Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61140 944 / 0 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT1G11100 875 / 0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2) AT1G50410 840 / 0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT3G20010 811 / 0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT3G16600 429 / 2e-136 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT5G43530 353 / 2e-102 Helicase protein with RING/U-box domain (.1) AT5G22750 342 / 3e-100 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT1G05120 300 / 6e-87 Helicase protein with RING/U-box domain (.1) AT5G05130 228 / 1e-61 DNA/RNA helicase protein (.1) AT1G02670 161 / 1e-40 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018465 [exp] 1078 / 0 AT1G61140 546 / 2e-175 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10041008 [exp] 824 / 0 AT1G50410 1060 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10013452 [exp] 778 / 0 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10043365 [exp] 367 / 8e-109 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10039001 [exp] 321 / 7e-94 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10041156 [exp] 321 / 4e-92 AT5G43530 1222 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10030044 [exp] 308 / 3e-88 AT1G05120 1047 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10027296 [exp] 133 / 4e-33 AT5G05130 470 / 1e-159 DNA/RNA helicase protein (.1) Lus10019523 [exp] 124 / 2e-31 AT5G22750 257 / 3e-79 DNA/RNA helicase protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G037700 [exp] 1102 / 0 AT1G61140 1007 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.011G046400 [exp] 1091 / 0 AT1G61140 958 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.007G000700 [exp] 877 / 0 AT1G50410 1083 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Potri.003G083400 [exp] 332 / 4e-97 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.004G189400 [exp] 331 / 3e-96 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1) Potri.006G035700 [exp] 317 / 2e-92 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.014G154600 [exp] 310 / 7e-90 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.016G033800 [exp] 293 / 3e-84 AT5G05130 650 / 0.0 DNA/RNA helicase protein (.1) Potri.016G034000 [exp] 286 / 1e-81 AT5G05130 700 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033700 [exp] 214 / 5e-57 AT5G05130 710 / 0.0 DNA/RNA helicase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10011211 pacid=23147165 polypeptide=Lus10011211 locus=Lus10011211.g ID=Lus10011211.BGIv1.0 annot-version=v1.0 ATGGCGTCGGACGGAAACTCCGGGATGCAGCTGCGAGGAGGAGGAGAAGGAGGAGATATAGTTTCTGCTGACTTTGACTTGGACGATATCTCCATTGATC TCGATATGGTGATGGGGATTCTCGAAGAGTCTAGTCCTCAATCTCAACAGGAGGATGCACAGAGTTTAGTGGATAATGGATTGCAAGGTGGATTAATAGC TGATTCGGGGAATCAATTGATCCAGCTTCCAGCTTCTGGTGAGACTTCGCCATCAGCTTATGAGACTGATTCACGAGGTGTTCTCTATGAGCCTTGGATG GACAATTCGGGTTTTGGTTTGGTATGTGATGGGGCATTGGTTGAGAATGGTAATGTGGTTCAAGGGTATGAGAATGGAGCTGAACAGCCTATGGATATGG CACTGGAGGGTGGATCTGCCCCTTTTCAGATTGCGTATCCTTCTACGTCTCCGATCTCCCACAACTCTGATCTTAGTAGTGATTTAGACGGGCTTTACTC CGGTGGTGCAGATTTCTCGCAGTATGACGTATCTGGTGAGTTCGATTCCGAAAAGTTCCCTGGCGATGGATCAATTACGGTCGATGAGATGATGGGTGAT TTGGGTGTGTATTCAATTGATAACTTTGAAGGCTCTAGTGTTAAGGGGTTCGGATTTGAAGACCATGGTAAACAAGAATCACGTGCCAATTTCAAATTTG GGTCTTGTGTTTACGAGGGAGGACACGGAGAAACGTCAATGCGACCTTGCAGTTCCGTGAAATTGGAAACTTCGGTACGACCTTGTAGTTCTGGCACATT GGAGCCCAGGTCTAGCGGGAAGCCACCAGTTTCTGTTCATCCAAAGCAGTTCACGTCTGTTCCTGCAATAATAAGCCGTAGTAGCAAAATCAAGGCAGAG AAAGGCTATTCAAGAGTTGCACCAAGCGGTTCTGAACTCCCTGGCGTTTCCTATCCCACCAATACTAGACACATGAATTCAAATGTCATGGACCAGCATT TTTCTAGTGTACAGCGATATAGAAAACTCAACAACTACTTGCATAGGCATGATGGAATTATTTCTCAAAAGACCTTTGCTTCTCCATTCTCTCGAGTCAG TCCAGAGTCAACTCACAGTAATTCATCAGGTAGCAGATCTGTTGTGGATGACGACTCTGACATCTGTATTCTTGAAGATATCAGTCAACCTCCTCGCTTA AGTCAGTTTCAACCATTTCAGAAGCCCACCATCTCGATGATGCCAGCATCACCCGCTAGTAGCACCGTTAGTTATGGTGATCCCCCTCATTGCACTGGAG CTGGAGGCAGGCTTAGGACCTGCGATGAGCGAGTCCTTTTTCGAGCTGCTTTGCAGGATCTTAATCAACCAAAGGCTGAAGCAAATCCACCTGATGGCTT GATGGCAATACCTCTAATGAGACATCAGCGAATTGCTTTGTCATGGATGGCTCAAAAGGAAACATCTGGGTTTAATTGTTTAGGAGGAATTCTTGCAGAT GATCAGGGTTTGGGAAAGACGATATCAACCATTGCCCTCATACTCAAAGAAAGGGCACCATGTCGTGGAGTCGATGTAAAAGTTGTTAAGAAAGAAGAGT GTGAGACCTTGGATTTAGATGAAGACGACGAAGATGCTGATTTCAAGGAAATAAAAAAGGAAAGTGGTGATTGTCGAGTTACGTCCAATCATCAAACTGC AACGAAGGATGCAAATGTTCATGGTACTTCCAAAGGAAGACCAGCTGCTGGGACTCTGATTGTTTGTCCTACTAGTGTTCTTCGACAATGGGCTGAGGAG TTGCATAAGAAGGTAACTGCGAAAGCAGATCTATCGGTCATGGTATATCATGGTAGCAGTCGAACAAAAGATCCTCACGAGCTTGCACAGTATGATGTGG TCCTGACAACATACTCTATAGTGAGCATGGAAGTCCCAAAGAAATCATTTGCTGATGAGGGTGATGAAGAAACTGAAGATGGTCCATCCGGTAAGAAAAG GAAGTATCCTTCAGCTTTTGGCAAGAAAGGTGGTAAGAAGGAGGCAGACAGAGAATTGTTTGAGACTCTTGCTCGGCCGCTGGCAAAGGTAGCGTGGTTT AGGGTTGTTTTGGATGAAGCACAGAGCATTAAGAATCACAAAACTCAAGTAGCTAGGGCATGTTGGGGTCTTCGTGCAAAACGCAGATGGTGCTTGTCGG GGACACCCCTGCAGAATGCCATTGATGATCTATATAGCTACTTCAGGTTTCTGAGATATGATCCTTACACAGTCTATACTTCATTCTGCAATGGAATAAA AGGTCCAATTCAAAGAAATCCAGCTAAAGGTTACAGAAAGTTACAAGCTGTCTTGAAGACAGTAATGCTTCGTCGTACCAAAGGTACGCTGCTTGATGGG GAGCCAATCATCAACTTACCCCCGAAGACCATAGAACTGAAAAAAGTTGATTTTTCAGATGAAGAGCGCTGTTTCTATTCCAGACTCGAGAATGATTCAC GTGCACAGTTCAAGGAGTACGCTGCGGCAGGAACAGTGAGACAAAACTACGTTAACATCTTGCTGATGCTCCTGCGTCTTCGTCAAGCATGCGATCACCC GCTTCTTGTTAGAGGCTATGAATCAGTTGCATTGGGGAAATCCTCAATTGAGCTGGCTATGACGCTTCCTCATGAAAAGCGCTTATCCCTTCTCAATTGC TTAGAGGCATCTTTGGCGATCTGTGGCCTCTGTAATGATCCACCTGAAGATGCAGTTGTGTCTGTTTGTGGTCATGTTTTCTGCAATCAATGCATTTTGG AACATCTTAACGGAGACGACAGTCAATGCCCTACTCATTGCAAAACTCGGCTAAATGCTTCTTCAGTGTTCTCCAAAGCCATTTTGGACACTTCCCGTGT TGACCAGATTGTTGAGTTTTCTCCATCTGGAACCATTAGCGAAGTCAACTCCCGTCCTGAAAGCGGCGCATACGATTCCTCAAAAATCAAGGCAGCTCTC GCTGTCCTGGAGTCACTTTCGAAGCCAAAACTGCCTGCTGTAAAATGCGAAGAGAATTCGGTTAGTCATGATACATTGCCTCAAGACTCATCTGGTTGCG GAAATTCTGCGGATCTCAGTAATAGTGGGAATGGCAAGGTTGCTGGCGATAAGGCTATAGTATTCTCGCAGTGGACGAGGATGTTAGATTTGCTAGAAGC TTGCCTTAAAACTTCTTCCATTCAGTACCGAAGACTCGACGGGACAATGTCAGTAGCTGCTAGAGAAAAAGCTGTCAAGGACTTCAACACACTACCAGAG GTTACTGTCATTATCATGTCTCTCAAAGCCGCTAGTCTAGGATTGAACATGGTTGCTGCTTGCCACGTCATCCTTCTCGACCTGTGGTGGAACCCCACGA CAGAAGATCAAGCCATTGACAGAGCGCATCGTATTGGCCAGACTCGTCCTGTCACCGTGCTTCGGTTAACCGTCAAGGACACTGTCGAAGATCGTATTCT AGCATTACAGCAAAAGAAGAGACAGATGGTCTCATCGGCGTTCGGGGAGGACGGAGATGGCAGCCAGCAGACTCGACTAACCGAGGAGGACCTGAAATAT CTGTTCATGGGTTGA
AA sequence Show only first row Show all	>Lus10011211 pacid=23147165 polypeptide=Lus10011211 locus=Lus10011211.g ID=Lus10011211.BGIv1.0 annot-version=v1.0 MASDGNSGMQLRGGGEGGDIVSADFDLDDISIDLDMVMGILEESSPQSQQEDAQSLVDNGLQGGLIADSGNQLIQLPASGETSPSAYETDSRGVLYEPWM DNSGFGLVCDGALVENGNVVQGYENGAEQPMDMALEGGSAPFQIAYPSTSPISHNSDLSSDLDGLYSGGADFSQYDVSGEFDSEKFPGDGSITVDEMMGD LGVYSIDNFEGSSVKGFGFEDHGKQESRANFKFGSCVYEGGHGETSMRPCSSVKLETSVRPCSSGTLEPRSSGKPPVSVHPKQFTSVPAIISRSSKIKAE KGYSRVAPSGSELPGVSYPTNTRHMNSNVMDQHFSSVQRYRKLNNYLHRHDGIISQKTFASPFSRVSPESTHSNSSGSRSVVDDDSDICILEDISQPPRL SQFQPFQKPTISMMPASPASSTVSYGDPPHCTGAGGRLRTCDERVLFRAALQDLNQPKAEANPPDGLMAIPLMRHQRIALSWMAQKETSGFNCLGGILAD DQGLGKTISTIALILKERAPCRGVDVKVVKKEECETLDLDEDDEDADFKEIKKESGDCRVTSNHQTATKDANVHGTSKGRPAAGTLIVCPTSVLRQWAEE LHKKVTAKADLSVMVYHGSSRTKDPHELAQYDVVLTTYSIVSMEVPKKSFADEGDEETEDGPSGKKRKYPSAFGKKGGKKEADRELFETLARPLAKVAWF RVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPLQNAIDDLYSYFRFLRYDPYTVYTSFCNGIKGPIQRNPAKGYRKLQAVLKTVMLRRTKGTLLDG EPIINLPPKTIELKKVDFSDEERCFYSRLENDSRAQFKEYAAAGTVRQNYVNILLMLLRLRQACDHPLLVRGYESVALGKSSIELAMTLPHEKRLSLLNC LEASLAICGLCNDPPEDAVVSVCGHVFCNQCILEHLNGDDSQCPTHCKTRLNASSVFSKAILDTSRVDQIVEFSPSGTISEVNSRPESGAYDSSKIKAAL AVLESLSKPKLPAVKCEENSVSHDTLPQDSSGCGNSADLSNSGNGKVAGDKAIVFSQWTRMLDLLEACLKTSSIQYRRLDGTMSVAAREKAVKDFNTLPE VTVIIMSLKAASLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRQMVSSAFGEDGDGSQQTRLTEEDLKY LFMG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61140		EDA16	embryo sac development arrest ...		Lus10011211 [exp]	0	1
AT5G58410			HEAT/U-box domain-containing p...		Lus10042236 [exp]	1.0	0.8833
AT1G11060			WAPL (Wings apart-like protein...		Lus10011196 [exp]	3.6	0.8214
AT1G72390			unknown protein		Lus10013169 [exp]	4.5	0.8734
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10013804 [exp]	4.6	0.7990
AT5G35560			DENN (AEX-3) domain-containing...		Lus10017173 [exp]	5.0	0.8537
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10030809 [exp]	5.3	0.8282
AT5G60170			RNA binding (RRM/RBD/RNP motif...		Lus10036140 [exp]	5.7	0.8231
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Lus10017071 [exp]	6.3	0.8281
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10010197 [exp]	6.9	0.8574
AT1G68710			ATPase E1-E2 type family prote...		Lus10034403 [exp]	7.1	0.8059

Compare expression of checked genes

Lus10011211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.